miRNA display CGI


Results 1 - 20 of 31 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9256 5' -46.5 NC_002512.2 + 5497 0.67 0.999975
Target:  5'- cGCGCGUCcgCGCCGgggUCgcgaggUCCc -3'
miRNA:   3'- cUGUGCAGa-GCGGCa--AGauuauaAGG- -5'
9256 5' -46.5 NC_002512.2 + 13653 0.66 0.999995
Target:  5'- cGAC-CGUCUCGCCGcggCUccagcUCCc -3'
miRNA:   3'- -CUGuGCAGAGCGGCaa-GAuuauaAGG- -5'
9256 5' -46.5 NC_002512.2 + 17309 0.66 0.999997
Target:  5'- -uCGCGUCgUCGCCGccgUCgucGUcgUCCc -3'
miRNA:   3'- cuGUGCAG-AGCGGCa--AGau-UAuaAGG- -5'
9256 5' -46.5 NC_002512.2 + 21909 0.66 0.999998
Target:  5'- aGCACGUCUCGUCGccgCUAcgGa--- -3'
miRNA:   3'- cUGUGCAGAGCGGCaa-GAUuaUaagg -5'
9256 5' -46.5 NC_002512.2 + 38237 0.66 0.999998
Target:  5'- --gACGUCUcCGCCGUcCUGGc--UCCg -3'
miRNA:   3'- cugUGCAGA-GCGGCAaGAUUauaAGG- -5'
9256 5' -46.5 NC_002512.2 + 58760 1.15 0.01945
Target:  5'- gGACACGUCUCGCCGUUCUAAUAUUCCa -3'
miRNA:   3'- -CUGUGCAGAGCGGCAAGAUUAUAAGG- -5'
9256 5' -46.5 NC_002512.2 + 66499 0.66 0.999997
Target:  5'- cGugACGuUUUCGCCcg--UGAUGUUCCa -3'
miRNA:   3'- -CugUGC-AGAGCGGcaagAUUAUAAGG- -5'
9256 5' -46.5 NC_002512.2 + 73980 0.69 0.999896
Target:  5'- gGACGCGUCggCGCCGgaCUcg---UCCc -3'
miRNA:   3'- -CUGUGCAGa-GCGGCaaGAuuauaAGG- -5'
9256 5' -46.5 NC_002512.2 + 76516 0.67 0.99999
Target:  5'- cGCACGUCcagUUGCCGg-CUGAcGUUCUg -3'
miRNA:   3'- cUGUGCAG---AGCGGCaaGAUUaUAAGG- -5'
9256 5' -46.5 NC_002512.2 + 83288 0.66 0.999999
Target:  5'- aGAgGCGUCUggggcCGCCGUUCgucucgguUGAUAUacuUCUg -3'
miRNA:   3'- -CUgUGCAGA-----GCGGCAAG--------AUUAUA---AGG- -5'
9256 5' -46.5 NC_002512.2 + 83396 0.68 0.999939
Target:  5'- cGCGCGUCccCGCCGUgggGGU-UUCCg -3'
miRNA:   3'- cUGUGCAGa-GCGGCAagaUUAuAAGG- -5'
9256 5' -46.5 NC_002512.2 + 84319 0.68 0.999939
Target:  5'- cGGCGCGUCgcgCGCCGcagcgUCgccgcgUCCu -3'
miRNA:   3'- -CUGUGCAGa--GCGGCa----AGauuauaAGG- -5'
9256 5' -46.5 NC_002512.2 + 88946 0.76 0.968026
Target:  5'- cGGCGCGUCUCGuCCGUaucuggcucugcgUCUGGgucUCCg -3'
miRNA:   3'- -CUGUGCAGAGC-GGCA-------------AGAUUauaAGG- -5'
9256 5' -46.5 NC_002512.2 + 113170 0.68 0.999939
Target:  5'- -cCACGUCggacgUGCCGgggCUGcguUGUUCCa -3'
miRNA:   3'- cuGUGCAGa----GCGGCaa-GAUu--AUAAGG- -5'
9256 5' -46.5 NC_002512.2 + 128120 0.66 0.999999
Target:  5'- cGGCGcCGUCUCGCCGaaggucaggcggcggCUGGUcUUCg -3'
miRNA:   3'- -CUGU-GCAGAGCGGCaa-------------GAUUAuAAGg -5'
9256 5' -46.5 NC_002512.2 + 137837 0.7 0.999157
Target:  5'- aGCACGUCUCuCUGUUCUuaaauagGUUCUu -3'
miRNA:   3'- cUGUGCAGAGcGGCAAGAuua----UAAGG- -5'
9256 5' -46.5 NC_002512.2 + 139166 0.68 0.999939
Target:  5'- aGGC-CGUCUUGCCGcacUCUAGgg--CCa -3'
miRNA:   3'- -CUGuGCAGAGCGGCa--AGAUUauaaGG- -5'
9256 5' -46.5 NC_002512.2 + 142307 0.68 0.999954
Target:  5'- cGACGCGUCcgUCGCCGU-CUGcgGa--- -3'
miRNA:   3'- -CUGUGCAG--AGCGGCAaGAUuaUaagg -5'
9256 5' -46.5 NC_002512.2 + 142433 0.74 0.988565
Target:  5'- aGGCGCGUCUCcgguuuCCGUUCUGugcUGUUCg -3'
miRNA:   3'- -CUGUGCAGAGc-----GGCAAGAUu--AUAAGg -5'
9256 5' -46.5 NC_002512.2 + 144055 0.76 0.971371
Target:  5'- cGACcCGUCaUCGCCGUUCcuuucUGUUCCc -3'
miRNA:   3'- -CUGuGCAG-AGCGGCAAGauu--AUAAGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.