Results 21 - 40 of 45 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
9258 | 3' | -54.7 | NC_002512.2 | + | 158359 | 0.68 | 0.941833 |
Target: 5'- aCAGUCGccuuuUCGGGCCGUGUUGuCGa -3' miRNA: 3'- cGUCAGCcucu-AGCUCGGCACGAU-GC- -5' |
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9258 | 3' | -54.7 | NC_002512.2 | + | 82031 | 0.68 | 0.946203 |
Target: 5'- -gGGUCGG-GGUCGcGCCG-GCgGCGg -3' miRNA: 3'- cgUCAGCCuCUAGCuCGGCaCGaUGC- -5' |
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9258 | 3' | -54.7 | NC_002512.2 | + | 36582 | 0.68 | 0.946203 |
Target: 5'- gGCGGU-GGAGAccuccaggaGAGCC-UGCUGCGa -3' miRNA: 3'- -CGUCAgCCUCUag-------CUCGGcACGAUGC- -5' |
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9258 | 3' | -54.7 | NC_002512.2 | + | 23472 | 0.68 | 0.946203 |
Target: 5'- cGCA--CGGAGAUgaugcCGAGCaugcugGUGCUGCGg -3' miRNA: 3'- -CGUcaGCCUCUA-----GCUCGg-----CACGAUGC- -5' |
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9258 | 3' | -54.7 | NC_002512.2 | + | 3802 | 0.68 | 0.946203 |
Target: 5'- aGCAGUCccGAGAgCGAGCCGUcg-ACGg -3' miRNA: 3'- -CGUCAGc-CUCUaGCUCGGCAcgaUGC- -5' |
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9258 | 3' | -54.7 | NC_002512.2 | + | 188917 | 0.68 | 0.950352 |
Target: 5'- cGCGGUCGGAGAguccCGguGGCgGgGCgcgGCGg -3' miRNA: 3'- -CGUCAGCCUCUa---GC--UCGgCaCGa--UGC- -5' |
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9258 | 3' | -54.7 | NC_002512.2 | + | 176448 | 0.68 | 0.95195 |
Target: 5'- cGCGGUCGGGGuGUCGGGuuCCGcgGCUcucuucuccuggaugGCGg -3' miRNA: 3'- -CGUCAGCCUC-UAGCUC--GGCa-CGA---------------UGC- -5' |
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9258 | 3' | -54.7 | NC_002512.2 | + | 131232 | 0.68 | 0.954281 |
Target: 5'- cGCGGUCGGAGGccgCGguGGCC-UGCaGCa -3' miRNA: 3'- -CGUCAGCCUCUa--GC--UCGGcACGaUGc -5' |
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9258 | 3' | -54.7 | NC_002512.2 | + | 80012 | 0.67 | 0.957995 |
Target: 5'- gGCAGcCGGAGccggaCGAGgCGUcGCUGCu -3' miRNA: 3'- -CGUCaGCCUCua---GCUCgGCA-CGAUGc -5' |
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9258 | 3' | -54.7 | NC_002512.2 | + | 219885 | 0.67 | 0.957995 |
Target: 5'- cGgGGUCGGAGA-CGAGCCGaccGCc--- -3' miRNA: 3'- -CgUCAGCCUCUaGCUCGGCa--CGaugc -5' |
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9258 | 3' | -54.7 | NC_002512.2 | + | 28576 | 0.67 | 0.961496 |
Target: 5'- gGCAGaCGGAgcuGAUcCGAGCgGUGC-GCGu -3' miRNA: 3'- -CGUCaGCCU---CUA-GCUCGgCACGaUGC- -5' |
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9258 | 3' | -54.7 | NC_002512.2 | + | 96280 | 0.67 | 0.964791 |
Target: 5'- gGCAGgCGGGGGggcugccgCGGGCCGccGCcGCGg -3' miRNA: 3'- -CGUCaGCCUCUa-------GCUCGGCa-CGaUGC- -5' |
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9258 | 3' | -54.7 | NC_002512.2 | + | 102122 | 0.67 | 0.967882 |
Target: 5'- gGCcGUCGGAGGggGAcccugGCCGU-CUACGg -3' miRNA: 3'- -CGuCAGCCUCUagCU-----CGGCAcGAUGC- -5' |
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9258 | 3' | -54.7 | NC_002512.2 | + | 71977 | 0.66 | 0.973477 |
Target: 5'- cGCAGUUGGGGAacaugCG-GUCGUGgCaGCGg -3' miRNA: 3'- -CGUCAGCCUCUa----GCuCGGCAC-GaUGC- -5' |
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9258 | 3' | -54.7 | NC_002512.2 | + | 130227 | 0.66 | 0.973477 |
Target: 5'- gGCGG-CGGGGAaccUCuGGGCCccggcGUGCUugGu -3' miRNA: 3'- -CGUCaGCCUCU---AG-CUCGG-----CACGAugC- -5' |
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9258 | 3' | -54.7 | NC_002512.2 | + | 135317 | 0.66 | 0.975993 |
Target: 5'- gGCGGUCcccGAGGUCGgcgucAGCCGcgccggggUGCUGCu -3' miRNA: 3'- -CGUCAGc--CUCUAGC-----UCGGC--------ACGAUGc -5' |
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9258 | 3' | -54.7 | NC_002512.2 | + | 108900 | 0.66 | 0.975993 |
Target: 5'- uGCcGUCGGGGccCGuucGCCGgUGCUGCu -3' miRNA: 3'- -CGuCAGCCUCuaGCu--CGGC-ACGAUGc -5' |
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9258 | 3' | -54.7 | NC_002512.2 | + | 32544 | 0.66 | 0.975993 |
Target: 5'- gGCAGUgGGGGAUCuucuccAGCCGccggGCgccGCGg -3' miRNA: 3'- -CGUCAgCCUCUAGc-----UCGGCa---CGa--UGC- -5' |
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9258 | 3' | -54.7 | NC_002512.2 | + | 118915 | 0.66 | 0.980494 |
Target: 5'- cGCuGUgGGAGAagGGGgaCGUGCUgACGg -3' miRNA: 3'- -CGuCAgCCUCUagCUCg-GCACGA-UGC- -5' |
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9258 | 3' | -54.7 | NC_002512.2 | + | 18676 | 0.66 | 0.980494 |
Target: 5'- --cGUCGGAGAggaaGAGCuCGUGg-GCGg -3' miRNA: 3'- cguCAGCCUCUag--CUCG-GCACgaUGC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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