miRNA display CGI


Results 21 - 40 of 45 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9258 3' -54.7 NC_002512.2 + 158359 0.68 0.941833
Target:  5'- aCAGUCGccuuuUCGGGCCGUGUUGuCGa -3'
miRNA:   3'- cGUCAGCcucu-AGCUCGGCACGAU-GC- -5'
9258 3' -54.7 NC_002512.2 + 82031 0.68 0.946203
Target:  5'- -gGGUCGG-GGUCGcGCCG-GCgGCGg -3'
miRNA:   3'- cgUCAGCCuCUAGCuCGGCaCGaUGC- -5'
9258 3' -54.7 NC_002512.2 + 36582 0.68 0.946203
Target:  5'- gGCGGU-GGAGAccuccaggaGAGCC-UGCUGCGa -3'
miRNA:   3'- -CGUCAgCCUCUag-------CUCGGcACGAUGC- -5'
9258 3' -54.7 NC_002512.2 + 23472 0.68 0.946203
Target:  5'- cGCA--CGGAGAUgaugcCGAGCaugcugGUGCUGCGg -3'
miRNA:   3'- -CGUcaGCCUCUA-----GCUCGg-----CACGAUGC- -5'
9258 3' -54.7 NC_002512.2 + 3802 0.68 0.946203
Target:  5'- aGCAGUCccGAGAgCGAGCCGUcg-ACGg -3'
miRNA:   3'- -CGUCAGc-CUCUaGCUCGGCAcgaUGC- -5'
9258 3' -54.7 NC_002512.2 + 188917 0.68 0.950352
Target:  5'- cGCGGUCGGAGAguccCGguGGCgGgGCgcgGCGg -3'
miRNA:   3'- -CGUCAGCCUCUa---GC--UCGgCaCGa--UGC- -5'
9258 3' -54.7 NC_002512.2 + 176448 0.68 0.95195
Target:  5'- cGCGGUCGGGGuGUCGGGuuCCGcgGCUcucuucuccuggaugGCGg -3'
miRNA:   3'- -CGUCAGCCUC-UAGCUC--GGCa-CGA---------------UGC- -5'
9258 3' -54.7 NC_002512.2 + 131232 0.68 0.954281
Target:  5'- cGCGGUCGGAGGccgCGguGGCC-UGCaGCa -3'
miRNA:   3'- -CGUCAGCCUCUa--GC--UCGGcACGaUGc -5'
9258 3' -54.7 NC_002512.2 + 80012 0.67 0.957995
Target:  5'- gGCAGcCGGAGccggaCGAGgCGUcGCUGCu -3'
miRNA:   3'- -CGUCaGCCUCua---GCUCgGCA-CGAUGc -5'
9258 3' -54.7 NC_002512.2 + 219885 0.67 0.957995
Target:  5'- cGgGGUCGGAGA-CGAGCCGaccGCc--- -3'
miRNA:   3'- -CgUCAGCCUCUaGCUCGGCa--CGaugc -5'
9258 3' -54.7 NC_002512.2 + 28576 0.67 0.961496
Target:  5'- gGCAGaCGGAgcuGAUcCGAGCgGUGC-GCGu -3'
miRNA:   3'- -CGUCaGCCU---CUA-GCUCGgCACGaUGC- -5'
9258 3' -54.7 NC_002512.2 + 96280 0.67 0.964791
Target:  5'- gGCAGgCGGGGGggcugccgCGGGCCGccGCcGCGg -3'
miRNA:   3'- -CGUCaGCCUCUa-------GCUCGGCa-CGaUGC- -5'
9258 3' -54.7 NC_002512.2 + 102122 0.67 0.967882
Target:  5'- gGCcGUCGGAGGggGAcccugGCCGU-CUACGg -3'
miRNA:   3'- -CGuCAGCCUCUagCU-----CGGCAcGAUGC- -5'
9258 3' -54.7 NC_002512.2 + 71977 0.66 0.973477
Target:  5'- cGCAGUUGGGGAacaugCG-GUCGUGgCaGCGg -3'
miRNA:   3'- -CGUCAGCCUCUa----GCuCGGCAC-GaUGC- -5'
9258 3' -54.7 NC_002512.2 + 130227 0.66 0.973477
Target:  5'- gGCGG-CGGGGAaccUCuGGGCCccggcGUGCUugGu -3'
miRNA:   3'- -CGUCaGCCUCU---AG-CUCGG-----CACGAugC- -5'
9258 3' -54.7 NC_002512.2 + 135317 0.66 0.975993
Target:  5'- gGCGGUCcccGAGGUCGgcgucAGCCGcgccggggUGCUGCu -3'
miRNA:   3'- -CGUCAGc--CUCUAGC-----UCGGC--------ACGAUGc -5'
9258 3' -54.7 NC_002512.2 + 108900 0.66 0.975993
Target:  5'- uGCcGUCGGGGccCGuucGCCGgUGCUGCu -3'
miRNA:   3'- -CGuCAGCCUCuaGCu--CGGC-ACGAUGc -5'
9258 3' -54.7 NC_002512.2 + 32544 0.66 0.975993
Target:  5'- gGCAGUgGGGGAUCuucuccAGCCGccggGCgccGCGg -3'
miRNA:   3'- -CGUCAgCCUCUAGc-----UCGGCa---CGa--UGC- -5'
9258 3' -54.7 NC_002512.2 + 118915 0.66 0.980494
Target:  5'- cGCuGUgGGAGAagGGGgaCGUGCUgACGg -3'
miRNA:   3'- -CGuCAgCCUCUagCUCg-GCACGA-UGC- -5'
9258 3' -54.7 NC_002512.2 + 18676 0.66 0.980494
Target:  5'- --cGUCGGAGAggaaGAGCuCGUGg-GCGg -3'
miRNA:   3'- cguCAGCCUCUag--CUCG-GCACgaUGC- -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.