Results 61 - 80 of 93 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position |
R_P_ratio![]() |
P value |
Predicted miRNA align pattern | |||||||
9265 | 3' | -55.1 | NC_002512.2 | + | 75642 | 0.67 | 0.953018 |
Target: 5'- cACGCGggCgcu-CGCGC-GCGCGUCc -3' miRNA: 3'- -UGUGCuaGaacuGCGCGuCGCGCAGc -5' |
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9265 | 3' | -55.1 | NC_002512.2 | + | 122089 | 0.67 | 0.960383 |
Target: 5'- cGCACGcgCcgGACGCGagguCGGCGCugacGUCGg -3' miRNA: 3'- -UGUGCuaGaaCUGCGC----GUCGCG----CAGC- -5' |
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9265 | 3' | -55.1 | NC_002512.2 | + | 43040 | 0.67 | 0.953018 |
Target: 5'- gGCGCaGGUCcucggcGACGCGCAGgGCcUCGc -3' miRNA: 3'- -UGUG-CUAGaa----CUGCGCGUCgCGcAGC- -5' |
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9265 | 3' | -55.1 | NC_002512.2 | + | 58965 | 0.67 | 0.953018 |
Target: 5'- cGCGCGGcagcaucggCUcGAaGCGCAGCGUGUCc -3' miRNA: 3'- -UGUGCUa--------GAaCUgCGCGUCGCGCAGc -5' |
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9265 | 3' | -55.1 | NC_002512.2 | + | 99882 | 0.67 | 0.956807 |
Target: 5'- uGCugGAcCgggagGAgGCGCGGCcCGUCGa -3' miRNA: 3'- -UGugCUaGaa---CUgCGCGUCGcGCAGC- -5' |
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9265 | 3' | -55.1 | NC_002512.2 | + | 103495 | 0.67 | 0.949012 |
Target: 5'- cCGCGGaccgCUcGcCGgGCAGCGCGUUGg -3' miRNA: 3'- uGUGCUa---GAaCuGCgCGUCGCGCAGC- -5' |
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9265 | 3' | -55.1 | NC_002512.2 | + | 169062 | 0.66 | 0.97761 |
Target: 5'- gGCGCGAggggCUccGCG-GCGGCgGCGUCGc -3' miRNA: 3'- -UGUGCUa---GAacUGCgCGUCG-CGCAGC- -5' |
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9265 | 3' | -55.1 | NC_002512.2 | + | 201705 | 0.66 | 0.97761 |
Target: 5'- uGCGgGAUC--GGCG-GCGGCGuCGUCGu -3' miRNA: 3'- -UGUgCUAGaaCUGCgCGUCGC-GCAGC- -5' |
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9265 | 3' | -55.1 | NC_002512.2 | + | 155609 | 0.66 | 0.97761 |
Target: 5'- cCACGGg---GACGUGCGGCGCcuGUgCGa -3' miRNA: 3'- uGUGCUagaaCUGCGCGUCGCG--CA-GC- -5' |
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9265 | 3' | -55.1 | NC_002512.2 | + | 179218 | 0.66 | 0.97761 |
Target: 5'- uGCuuuuCGAUCUUGuGCGCcaGCAGCuggcgggccGUGUCGg -3' miRNA: 3'- -UGu---GCUAGAAC-UGCG--CGUCG---------CGCAGC- -5' |
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9265 | 3' | -55.1 | NC_002512.2 | + | 170463 | 0.66 | 0.977379 |
Target: 5'- uCACGA---UGGCGCacagguuGCAGCGCGUg- -3' miRNA: 3'- uGUGCUagaACUGCG-------CGUCGCGCAgc -5' |
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9265 | 3' | -55.1 | NC_002512.2 | + | 182990 | 0.66 | 0.977145 |
Target: 5'- gGCACGuAUUUgaggaaacggcgGAUGCGCGGCGagGUCa -3' miRNA: 3'- -UGUGC-UAGAa-----------CUGCGCGUCGCg-CAGc -5' |
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9265 | 3' | -55.1 | NC_002512.2 | + | 126740 | 0.66 | 0.976194 |
Target: 5'- gGCGCGugccUCUUGGCccgagacgccucgggGCGCGGCgGCGgCGg -3' miRNA: 3'- -UGUGCu---AGAACUG---------------CGCGUCG-CGCaGC- -5' |
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9265 | 3' | -55.1 | NC_002512.2 | + | 196407 | 0.66 | 0.972636 |
Target: 5'- gGCGCGGg---GACGCGgGGgGCGgCGg -3' miRNA: 3'- -UGUGCUagaaCUGCGCgUCgCGCaGC- -5' |
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9265 | 3' | -55.1 | NC_002512.2 | + | 118550 | 0.66 | 0.972636 |
Target: 5'- aACGCGGUCgcgucgGACGU-CGGgaGCGUCGa -3' miRNA: 3'- -UGUGCUAGaa----CUGCGcGUCg-CGCAGC- -5' |
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9265 | 3' | -55.1 | NC_002512.2 | + | 80849 | 0.66 | 0.97761 |
Target: 5'- -gGCGAgccUCggGACGCGgGGCucgGUGUCGg -3' miRNA: 3'- ugUGCU---AGaaCUGCGCgUCG---CGCAGC- -5' |
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9265 | 3' | -55.1 | NC_002512.2 | + | 153385 | 0.66 | 0.969869 |
Target: 5'- -gGCGGUCcggagcGACGUGgAGCGCGgCGg -3' miRNA: 3'- ugUGCUAGaa----CUGCGCgUCGCGCaGC- -5' |
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9265 | 3' | -55.1 | NC_002512.2 | + | 78258 | 0.66 | 0.969293 |
Target: 5'- gACGCGAUCggcccuccugacgUUguucuccGACGCGCGGacCGUGUCGu -3' miRNA: 3'- -UGUGCUAG-------------AA-------CUGCGCGUC--GCGCAGC- -5' |
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9265 | 3' | -55.1 | NC_002512.2 | + | 89004 | 0.66 | 0.966909 |
Target: 5'- aGCGCGGg---GACGUcggGCAGCGCGaUCc -3' miRNA: 3'- -UGUGCUagaaCUGCG---CGUCGCGC-AGc -5' |
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9265 | 3' | -55.1 | NC_002512.2 | + | 93702 | 0.66 | 0.966909 |
Target: 5'- gACGCGAUCccGGCGacccCGCcGCGCGgCGg -3' miRNA: 3'- -UGUGCUAGaaCUGC----GCGuCGCGCaGC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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