Results 61 - 80 of 93 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand |
Start Position![]() |
R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
9265 | 3' | -55.1 | NC_002512.2 | + | 148064 | 0.68 | 0.914688 |
Target: 5'- gGCA-GAUCgaGACGCGCcGCG-GUCGu -3' miRNA: 3'- -UGUgCUAGaaCUGCGCGuCGCgCAGC- -5' |
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9265 | 3' | -55.1 | NC_002512.2 | + | 152444 | 0.68 | 0.920271 |
Target: 5'- -gGCGAUUUcgacgGGCGCGCGGCguugggagGCGUCc -3' miRNA: 3'- ugUGCUAGAa----CUGCGCGUCG--------CGCAGc -5' |
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9265 | 3' | -55.1 | NC_002512.2 | + | 153385 | 0.66 | 0.969869 |
Target: 5'- -gGCGGUCcggagcGACGUGgAGCGCGgCGg -3' miRNA: 3'- ugUGCUAGaa----CUGCGCgUCGCGCaGC- -5' |
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9265 | 3' | -55.1 | NC_002512.2 | + | 155609 | 0.66 | 0.97761 |
Target: 5'- cCACGGg---GACGUGCGGCGCcuGUgCGa -3' miRNA: 3'- uGUGCUagaaCUGCGCGUCGCG--CA-GC- -5' |
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9265 | 3' | -55.1 | NC_002512.2 | + | 167163 | 0.73 | 0.732579 |
Target: 5'- cCGCGAggccgUCgaccgcGACGCGCuGCGCGUCa -3' miRNA: 3'- uGUGCU-----AGaa----CUGCGCGuCGCGCAGc -5' |
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9265 | 3' | -55.1 | NC_002512.2 | + | 169062 | 0.66 | 0.97761 |
Target: 5'- gGCGCGAggggCUccGCG-GCGGCgGCGUCGc -3' miRNA: 3'- -UGUGCUa---GAacUGCgCGUCG-CGCAGC- -5' |
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9265 | 3' | -55.1 | NC_002512.2 | + | 170463 | 0.66 | 0.977379 |
Target: 5'- uCACGA---UGGCGCacagguuGCAGCGCGUg- -3' miRNA: 3'- uGUGCUagaACUGCG-------CGUCGCGCAgc -5' |
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9265 | 3' | -55.1 | NC_002512.2 | + | 170774 | 0.66 | 0.963748 |
Target: 5'- aGCGCGAcg--GGCGCGauCGGCGCGaCGa -3' miRNA: 3'- -UGUGCUagaaCUGCGC--GUCGCGCaGC- -5' |
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9265 | 3' | -55.1 | NC_002512.2 | + | 172137 | 0.66 | 0.963748 |
Target: 5'- -gACGAggagCgcGACGgGCAGCGgGUCu -3' miRNA: 3'- ugUGCUa---GaaCUGCgCGUCGCgCAGc -5' |
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9265 | 3' | -55.1 | NC_002512.2 | + | 178560 | 0.7 | 0.862103 |
Target: 5'- uCACGAUCcgGuuGUGguGCGCGUCc -3' miRNA: 3'- uGUGCUAGaaCugCGCguCGCGCAGc -5' |
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9265 | 3' | -55.1 | NC_002512.2 | + | 179218 | 0.66 | 0.97761 |
Target: 5'- uGCuuuuCGAUCUUGuGCGCcaGCAGCuggcgggccGUGUCGg -3' miRNA: 3'- -UGu---GCUAGAAC-UGCG--CGUCG---------CGCAGC- -5' |
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9265 | 3' | -55.1 | NC_002512.2 | + | 179563 | 0.66 | 0.965037 |
Target: 5'- gGCuCGAUCUUcGGCG-GCGGCaggaucgcaucuuggGCGUCGa -3' miRNA: 3'- -UGuGCUAGAA-CUGCgCGUCG---------------CGCAGC- -5' |
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9265 | 3' | -55.1 | NC_002512.2 | + | 180761 | 0.8 | 0.344331 |
Target: 5'- cCGCGAUCUUGGCGUGCAGC-CGggCGa -3' miRNA: 3'- uGUGCUAGAACUGCGCGUCGcGCa-GC- -5' |
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9265 | 3' | -55.1 | NC_002512.2 | + | 182990 | 0.66 | 0.977145 |
Target: 5'- gGCACGuAUUUgaggaaacggcgGAUGCGCGGCGagGUCa -3' miRNA: 3'- -UGUGC-UAGAa-----------CUGCGCGUCGCg-CAGc -5' |
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9265 | 3' | -55.1 | NC_002512.2 | + | 183943 | 0.68 | 0.935659 |
Target: 5'- gGCugGuUCUgcucccggGACGCGCGcucGgGCGUCGu -3' miRNA: 3'- -UGugCuAGAa-------CUGCGCGU---CgCGCAGC- -5' |
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9265 | 3' | -55.1 | NC_002512.2 | + | 188915 | 0.72 | 0.777394 |
Target: 5'- cGCGCGGUCggagagucccgGugGCGgGGCGCGgCGg -3' miRNA: 3'- -UGUGCUAGaa---------CugCGCgUCGCGCaGC- -5' |
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9265 | 3' | -55.1 | NC_002512.2 | + | 196407 | 0.66 | 0.972636 |
Target: 5'- gGCGCGGg---GACGCGgGGgGCGgCGg -3' miRNA: 3'- -UGUGCUagaaCUGCGCgUCgCGCaGC- -5' |
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9265 | 3' | -55.1 | NC_002512.2 | + | 198942 | 0.66 | 0.963748 |
Target: 5'- aACACGGUCaggGAccucagcgguCGCGUGGCgucGCGUCGc -3' miRNA: 3'- -UGUGCUAGaa-CU----------GCGCGUCG---CGCAGC- -5' |
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9265 | 3' | -55.1 | NC_002512.2 | + | 200830 | 0.76 | 0.574514 |
Target: 5'- gACGCGAaggUCagcgGGgGCGCGGCGCGUCu -3' miRNA: 3'- -UGUGCU---AGaa--CUgCGCGUCGCGCAGc -5' |
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9265 | 3' | -55.1 | NC_002512.2 | + | 201705 | 0.66 | 0.97761 |
Target: 5'- uGCGgGAUC--GGCG-GCGGCGuCGUCGu -3' miRNA: 3'- -UGUgCUAGaaCUGCgCGUCGC-GCAGC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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