miRNA display CGI


Results 41 - 60 of 93 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9265 3' -55.1 NC_002512.2 + 105047 0.67 0.944784
Target:  5'- uCGCGGgccucgCUcGGCGacgGCGGCGUGUCGg -3'
miRNA:   3'- uGUGCUa-----GAaCUGCg--CGUCGCGCAGC- -5'
9265 3' -55.1 NC_002512.2 + 105458 0.76 0.564671
Target:  5'- gACAUGAUCUUGAcCGCGUacauGGCGaCGUCc -3'
miRNA:   3'- -UGUGCUAGAACU-GCGCG----UCGC-GCAGc -5'
9265 3' -55.1 NC_002512.2 + 112333 0.66 0.966909
Target:  5'- gACGC---CUUGGCGCuguacaGCAGCGUGUCc -3'
miRNA:   3'- -UGUGcuaGAACUGCG------CGUCGCGCAGc -5'
9265 3' -55.1 NC_002512.2 + 112876 0.71 0.822706
Target:  5'- -gAUGAUCUUGcgcccgcccuGCGUGCGGC-CGUCGg -3'
miRNA:   3'- ugUGCUAGAAC----------UGCGCGUCGcGCAGC- -5'
9265 3' -55.1 NC_002512.2 + 114330 0.7 0.862103
Target:  5'- -aGCGuUCUUGACGCGCgcGGCGgG-CGa -3'
miRNA:   3'- ugUGCuAGAACUGCGCG--UCGCgCaGC- -5'
9265 3' -55.1 NC_002512.2 + 118550 0.66 0.972636
Target:  5'- aACGCGGUCgcgucgGACGU-CGGgaGCGUCGa -3'
miRNA:   3'- -UGUGCUAGaa----CUGCGcGUCg-CGCAGC- -5'
9265 3' -55.1 NC_002512.2 + 122089 0.67 0.960383
Target:  5'- cGCACGcgCcgGACGCGagguCGGCGCugacGUCGg -3'
miRNA:   3'- -UGUGCuaGaaCUGCGC----GUCGCG----CAGC- -5'
9265 3' -55.1 NC_002512.2 + 123836 0.66 0.969869
Target:  5'- cGCACGAUCU--GCGCccGCGGCGaCGg-- -3'
miRNA:   3'- -UGUGCUAGAacUGCG--CGUCGC-GCagc -5'
9265 3' -55.1 NC_002512.2 + 124635 0.7 0.862103
Target:  5'- cCugGAUCcgGGUGCGCGGCGCGgCGc -3'
miRNA:   3'- uGugCUAGaaCUGCGCGUCGCGCaGC- -5'
9265 3' -55.1 NC_002512.2 + 126740 0.66 0.976194
Target:  5'- gGCGCGugccUCUUGGCccgagacgccucgggGCGCGGCgGCGgCGg -3'
miRNA:   3'- -UGUGCu---AGAACUG---------------CGCGUCG-CGCaGC- -5'
9265 3' -55.1 NC_002512.2 + 128047 0.68 0.930756
Target:  5'- uGCACGGcCccGACGguCGCGGCGuCGUCGu -3'
miRNA:   3'- -UGUGCUaGaaCUGC--GCGUCGC-GCAGC- -5'
9265 3' -55.1 NC_002512.2 + 129234 0.69 0.908878
Target:  5'- cGCGCGAUCgcggGACugcuGCGCGGgGCGaUCc -3'
miRNA:   3'- -UGUGCUAGaa--CUG----CGCGUCgCGC-AGc -5'
9265 3' -55.1 NC_002512.2 + 131016 0.66 0.966909
Target:  5'- ----cGUCUUcGACGCGCucgAGgGCGUCGg -3'
miRNA:   3'- ugugcUAGAA-CUGCGCG---UCgCGCAGC- -5'
9265 3' -55.1 NC_002512.2 + 131291 0.7 0.862103
Target:  5'- -gACGG-CUgGACGUGCAGCGCGg-- -3'
miRNA:   3'- ugUGCUaGAaCUGCGCGUCGCGCagc -5'
9265 3' -55.1 NC_002512.2 + 132527 0.68 0.930756
Target:  5'- cCGCGGUCcccgcuccGCGgGCGGCGcCGUCGg -3'
miRNA:   3'- uGUGCUAGaac-----UGCgCGUCGC-GCAGC- -5'
9265 3' -55.1 NC_002512.2 + 133088 0.7 0.869415
Target:  5'- ---gGGUCcggUUGGCGCGCAGCGacucccCGUCGg -3'
miRNA:   3'- ugugCUAG---AACUGCGCGUCGC------GCAGC- -5'
9265 3' -55.1 NC_002512.2 + 135902 0.75 0.624183
Target:  5'- gACGCGuUCgcgGACGCGCAGCGacaCGUCc -3'
miRNA:   3'- -UGUGCuAGaa-CUGCGCGUCGC---GCAGc -5'
9265 3' -55.1 NC_002512.2 + 137776 0.68 0.927706
Target:  5'- cCGCGGUCUggaggucggcgcucGGCGgGCcGCGCGUCc -3'
miRNA:   3'- uGUGCUAGAa-------------CUGCgCGuCGCGCAGc -5'
9265 3' -55.1 NC_002512.2 + 140063 0.66 0.966909
Target:  5'- aGCGCGGUCUcGACGUccucuCGGCGCucaUCGg -3'
miRNA:   3'- -UGUGCUAGAaCUGCGc----GUCGCGc--AGC- -5'
9265 3' -55.1 NC_002512.2 + 145560 0.68 0.935659
Target:  5'- gACGCGGc---GACGCuGCGGCGCG-CGa -3'
miRNA:   3'- -UGUGCUagaaCUGCG-CGUCGCGCaGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.