miRNA display CGI


Results 41 - 60 of 93 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9265 3' -55.1 NC_002512.2 + 137776 0.68 0.927706
Target:  5'- cCGCGGUCUggaggucggcgcucGGCGgGCcGCGCGUCc -3'
miRNA:   3'- uGUGCUAGAa-------------CUGCgCGuCGCGCAGc -5'
9265 3' -55.1 NC_002512.2 + 37596 0.68 0.925627
Target:  5'- aACACGAgcaggaUGACGaCGCAGaGCGUCc -3'
miRNA:   3'- -UGUGCUaga---ACUGC-GCGUCgCGCAGc -5'
9265 3' -55.1 NC_002512.2 + 145560 0.68 0.935659
Target:  5'- gACGCGGc---GACGCuGCGGCGCG-CGa -3'
miRNA:   3'- -UGUGCUagaaCUGCG-CGUCGCGCaGC- -5'
9265 3' -55.1 NC_002512.2 + 207101 0.68 0.935659
Target:  5'- --gUGGUagcgGGCGCGCAGCuCGUCGg -3'
miRNA:   3'- uguGCUAgaa-CUGCGCGUCGcGCAGC- -5'
9265 3' -55.1 NC_002512.2 + 217857 0.68 0.930756
Target:  5'- -aGCGGUCUgcccGGCGUGgggAGCGCGUCc -3'
miRNA:   3'- ugUGCUAGAa---CUGCGCg--UCGCGCAGc -5'
9265 3' -55.1 NC_002512.2 + 152444 0.68 0.920271
Target:  5'- -gGCGAUUUcgacgGGCGCGCGGCguugggagGCGUCc -3'
miRNA:   3'- ugUGCUAGAa----CUGCGCGUCG--------CGCAGc -5'
9265 3' -55.1 NC_002512.2 + 91952 0.68 0.925627
Target:  5'- gGCGCGAUCgccagGGCGgaGCGGCaCGUCc -3'
miRNA:   3'- -UGUGCUAGaa---CUGCg-CGUCGcGCAGc -5'
9265 3' -55.1 NC_002512.2 + 94674 0.68 0.925627
Target:  5'- gGCACGcUCUccGGCGCGCAGCuGCccUCGu -3'
miRNA:   3'- -UGUGCuAGAa-CUGCGCGUCG-CGc-AGC- -5'
9265 3' -55.1 NC_002512.2 + 75586 0.68 0.930756
Target:  5'- uCGCGGUCgacgUGGCGgcuuuCGC-GCGCGUCu -3'
miRNA:   3'- uGUGCUAGa---ACUGC-----GCGuCGCGCAGc -5'
9265 3' -55.1 NC_002512.2 + 75231 0.68 0.914688
Target:  5'- aACGCcGUCgcggUGACgaGCGCGGCcGCGUCc -3'
miRNA:   3'- -UGUGcUAGa---ACUG--CGCGUCG-CGCAGc -5'
9265 3' -55.1 NC_002512.2 + 90239 0.68 0.930756
Target:  5'- -gACGAUgUUGGCGUcccucgucgaGCAGUGCGUgGu -3'
miRNA:   3'- ugUGCUAgAACUGCG----------CGUCGCGCAgC- -5'
9265 3' -55.1 NC_002512.2 + 31818 0.68 0.930756
Target:  5'- gGCGCGGUCgagggGACGCGCgAGa-CGUCc -3'
miRNA:   3'- -UGUGCUAGaa---CUGCGCG-UCgcGCAGc -5'
9265 3' -55.1 NC_002512.2 + 50210 0.68 0.940334
Target:  5'- cGCgACGAUCguguaccaccUGGCGCuGacaAGCGCGUCGc -3'
miRNA:   3'- -UG-UGCUAGa---------ACUGCG-Cg--UCGCGCAGC- -5'
9265 3' -55.1 NC_002512.2 + 82107 0.68 0.942141
Target:  5'- uCAUGGUCUUGAggcacuccagguccuCGCgGCugAGCGCGUCc -3'
miRNA:   3'- uGUGCUAGAACU---------------GCG-CG--UCGCGCAGc -5'
9265 3' -55.1 NC_002512.2 + 132527 0.68 0.930756
Target:  5'- cCGCGGUCcccgcuccGCGgGCGGCGcCGUCGg -3'
miRNA:   3'- uGUGCUAGaac-----UGCgCGUCGC-GCAGC- -5'
9265 3' -55.1 NC_002512.2 + 128047 0.68 0.930756
Target:  5'- uGCACGGcCccGACGguCGCGGCGuCGUCGu -3'
miRNA:   3'- -UGUGCUaGaaCUGC--GCGUCGC-GCAGC- -5'
9265 3' -55.1 NC_002512.2 + 216347 0.68 0.925627
Target:  5'- gGCuCGAUCUUGGugaagUGCGUGGUGCGcCGc -3'
miRNA:   3'- -UGuGCUAGAACU-----GCGCGUCGCGCaGC- -5'
9265 3' -55.1 NC_002512.2 + 213828 0.68 0.925627
Target:  5'- -gACGAgagUCUcGAgGCGCGGCGCGg-- -3'
miRNA:   3'- ugUGCU---AGAaCUgCGCGUCGCGCagc -5'
9265 3' -55.1 NC_002512.2 + 205936 0.68 0.920271
Target:  5'- aACGCGAagUUGuCGCGCGGCaGCcucagGUCGc -3'
miRNA:   3'- -UGUGCUagAACuGCGCGUCG-CG-----CAGC- -5'
9265 3' -55.1 NC_002512.2 + 228092 0.68 0.920271
Target:  5'- cACACGGUCggGA-GCGaggAGgGCGUCGg -3'
miRNA:   3'- -UGUGCUAGaaCUgCGCg--UCgCGCAGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.