miRNA display CGI


Results 61 - 80 of 93 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9265 3' -55.1 NC_002512.2 + 148064 0.68 0.914688
Target:  5'- gGCA-GAUCgaGACGCGCcGCG-GUCGu -3'
miRNA:   3'- -UGUgCUAGaaCUGCGCGuCGCgCAGC- -5'
9265 3' -55.1 NC_002512.2 + 67261 0.69 0.883426
Target:  5'- uACGCGAUgUacacgucgcccaUGACGCGCugGGCG-GUCGa -3'
miRNA:   3'- -UGUGCUAgA------------ACUGCGCG--UCGCgCAGC- -5'
9265 3' -55.1 NC_002512.2 + 103091 0.69 0.902845
Target:  5'- -gGCGAUCccgggGACggGCGCGGCacGCGUCGc -3'
miRNA:   3'- ugUGCUAGaa---CUG--CGCGUCG--CGCAGC- -5'
9265 3' -55.1 NC_002512.2 + 101596 0.69 0.89659
Target:  5'- cCGCGGUCgu-GCGgGCGGC-CGUCGg -3'
miRNA:   3'- uGUGCUAGaacUGCgCGUCGcGCAGC- -5'
9265 3' -55.1 NC_002512.2 + 223811 0.69 0.890116
Target:  5'- -gGCGAcCgccggGACGaCGaCGGCGCGUCGg -3'
miRNA:   3'- ugUGCUaGaa---CUGC-GC-GUCGCGCAGC- -5'
9265 3' -55.1 NC_002512.2 + 90937 0.69 0.89659
Target:  5'- gGCGCGAcCggGGCGUGCgugGGCGCGaCGa -3'
miRNA:   3'- -UGUGCUaGaaCUGCGCG---UCGCGCaGC- -5'
9265 3' -55.1 NC_002512.2 + 92133 0.69 0.908878
Target:  5'- gACACGcugcgGGCGCuGCGGCGCGUg- -3'
miRNA:   3'- -UGUGCuagaaCUGCG-CGUCGCGCAgc -5'
9265 3' -55.1 NC_002512.2 + 221256 0.69 0.908878
Target:  5'- cCGCGGcggaagUCggggGACGCGgGGCGCGUgGa -3'
miRNA:   3'- uGUGCU------AGaa--CUGCGCgUCGCGCAgC- -5'
9265 3' -55.1 NC_002512.2 + 129234 0.69 0.908878
Target:  5'- cGCGCGAUCgcggGACugcuGCGCGGgGCGaUCc -3'
miRNA:   3'- -UGUGCUAGaa--CUG----CGCGUCgCGC-AGc -5'
9265 3' -55.1 NC_002512.2 + 124635 0.7 0.862103
Target:  5'- cCugGAUCcgGGUGCGCGGCGCGgCGc -3'
miRNA:   3'- uGugCUAGaaCUGCGCGUCGCGCaGC- -5'
9265 3' -55.1 NC_002512.2 + 104791 0.7 0.876524
Target:  5'- gGCGgGGUCc--GCGCGCGGCGgGUUGu -3'
miRNA:   3'- -UGUgCUAGaacUGCGCGUCGCgCAGC- -5'
9265 3' -55.1 NC_002512.2 + 15467 0.7 0.869415
Target:  5'- gACGCGGUCcucGgGCGCGGCGCGcUCc -3'
miRNA:   3'- -UGUGCUAGaacUgCGCGUCGCGC-AGc -5'
9265 3' -55.1 NC_002512.2 + 98168 0.7 0.839008
Target:  5'- cCGCGGUCUgGACggGCGCGGCGacCGUCc -3'
miRNA:   3'- uGUGCUAGAaCUG--CGCGUCGC--GCAGc -5'
9265 3' -55.1 NC_002512.2 + 208576 0.7 0.839008
Target:  5'- gGC-CGAguc-GACGCGCAGCGgGUCc -3'
miRNA:   3'- -UGuGCUagaaCUGCGCGUCGCgCAGc -5'
9265 3' -55.1 NC_002512.2 + 216478 0.7 0.846894
Target:  5'- -gGCG-UCccacaggGAgGCGCAGCGCGUCa -3'
miRNA:   3'- ugUGCuAGaa-----CUgCGCGUCGCGCAGc -5'
9265 3' -55.1 NC_002512.2 + 178560 0.7 0.862103
Target:  5'- uCACGAUCcgGuuGUGguGCGCGUCc -3'
miRNA:   3'- uGUGCUAGaaCugCGCguCGCGCAGc -5'
9265 3' -55.1 NC_002512.2 + 114330 0.7 0.862103
Target:  5'- -aGCGuUCUUGACGCGCgcGGCGgG-CGa -3'
miRNA:   3'- ugUGCuAGAACUGCGCG--UCGCgCaGC- -5'
9265 3' -55.1 NC_002512.2 + 131291 0.7 0.862103
Target:  5'- -gACGG-CUgGACGUGCAGCGCGg-- -3'
miRNA:   3'- ugUGCUaGAaCUGCGCGUCGCGCagc -5'
9265 3' -55.1 NC_002512.2 + 133088 0.7 0.869415
Target:  5'- ---gGGUCcggUUGGCGCGCAGCGacucccCGUCGg -3'
miRNA:   3'- ugugCUAG---AACUGCGCGUCGC------GCAGC- -5'
9265 3' -55.1 NC_002512.2 + 219800 0.7 0.869415
Target:  5'- gACACaGAUagggGACGCGCGGgGCG-CGa -3'
miRNA:   3'- -UGUG-CUAgaa-CUGCGCGUCgCGCaGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.