miRNA display CGI


Results 41 - 60 of 93 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9265 3' -55.1 NC_002512.2 + 216030 0.72 0.760872
Target:  5'- aGCGCGGUauagGGCGCGCgAGUGCGaCGg -3'
miRNA:   3'- -UGUGCUAgaa-CUGCGCG-UCGCGCaGC- -5'
9265 3' -55.1 NC_002512.2 + 167163 0.73 0.732579
Target:  5'- cCGCGAggccgUCgaccgcGACGCGCuGCGCGUCa -3'
miRNA:   3'- uGUGCU-----AGaa----CUGCGCGuCGCGCAGc -5'
9265 3' -55.1 NC_002512.2 + 78258 0.66 0.969293
Target:  5'- gACGCGAUCggcccuccugacgUUguucuccGACGCGCGGacCGUGUCGu -3'
miRNA:   3'- -UGUGCUAG-------------AA-------CUGCGCGUC--GCGCAGC- -5'
9265 3' -55.1 NC_002512.2 + 94410 0.76 0.574514
Target:  5'- -gGCGGUCUUGGCGCuccaguCGGCcGCGUCGa -3'
miRNA:   3'- ugUGCUAGAACUGCGc-----GUCG-CGCAGC- -5'
9265 3' -55.1 NC_002512.2 + 105458 0.76 0.564671
Target:  5'- gACAUGAUCUUGAcCGCGUacauGGCGaCGUCc -3'
miRNA:   3'- -UGUGCUAGAACU-GCGCG----UCGC-GCAGc -5'
9265 3' -55.1 NC_002512.2 + 182990 0.66 0.977145
Target:  5'- gGCACGuAUUUgaggaaacggcgGAUGCGCGGCGagGUCa -3'
miRNA:   3'- -UGUGC-UAGAa-----------CUGCGCGUCGCg-CAGc -5'
9265 3' -55.1 NC_002512.2 + 170463 0.66 0.977379
Target:  5'- uCACGA---UGGCGCacagguuGCAGCGCGUg- -3'
miRNA:   3'- uGUGCUagaACUGCG-------CGUCGCGCAgc -5'
9265 3' -55.1 NC_002512.2 + 201705 0.66 0.97761
Target:  5'- uGCGgGAUC--GGCG-GCGGCGuCGUCGu -3'
miRNA:   3'- -UGUgCUAGaaCUGCgCGUCGC-GCAGC- -5'
9265 3' -55.1 NC_002512.2 + 188915 0.72 0.777394
Target:  5'- cGCGCGGUCggagagucccgGugGCGgGGCGCGgCGg -3'
miRNA:   3'- -UGUGCUAGaa---------CugCGCgUCGCGCaGC- -5'
9265 3' -55.1 NC_002512.2 + 221456 0.72 0.779206
Target:  5'- gGCGCGGUCguccgaccgGcCGCGguGCGCGUUc -3'
miRNA:   3'- -UGUGCUAGaa-------CuGCGCguCGCGCAGc -5'
9265 3' -55.1 NC_002512.2 + 153385 0.66 0.969869
Target:  5'- -gGCGGUCcggagcGACGUGgAGCGCGgCGg -3'
miRNA:   3'- ugUGCUAGaa----CUGCGCgUCGCGCaGC- -5'
9265 3' -55.1 NC_002512.2 + 128047 0.68 0.930756
Target:  5'- uGCACGGcCccGACGguCGCGGCGuCGUCGu -3'
miRNA:   3'- -UGUGCUaGaaCUGC--GCGUCGC-GCAGC- -5'
9265 3' -55.1 NC_002512.2 + 89004 0.66 0.966909
Target:  5'- aGCGCGGg---GACGUcggGCAGCGCGaUCc -3'
miRNA:   3'- -UGUGCUagaaCUGCG---CGUCGCGC-AGc -5'
9265 3' -55.1 NC_002512.2 + 93702 0.66 0.966909
Target:  5'- gACGCGAUCccGGCGacccCGCcGCGCGgCGg -3'
miRNA:   3'- -UGUGCUAGaaCUGC----GCGuCGCGCaGC- -5'
9265 3' -55.1 NC_002512.2 + 207101 0.68 0.935659
Target:  5'- --gUGGUagcgGGCGCGCAGCuCGUCGg -3'
miRNA:   3'- uguGCUAgaa-CUGCGCGUCGcGCAGC- -5'
9265 3' -55.1 NC_002512.2 + 217857 0.68 0.930756
Target:  5'- -aGCGGUCUgcccGGCGUGgggAGCGCGUCc -3'
miRNA:   3'- ugUGCUAGAa---CUGCGCg--UCGCGCAGc -5'
9265 3' -55.1 NC_002512.2 + 132527 0.68 0.930756
Target:  5'- cCGCGGUCcccgcuccGCGgGCGGCGcCGUCGg -3'
miRNA:   3'- uGUGCUAGaac-----UGCgCGUCGC-GCAGC- -5'
9265 3' -55.1 NC_002512.2 + 228092 0.68 0.920271
Target:  5'- cACACGGUCggGA-GCGaggAGgGCGUCGg -3'
miRNA:   3'- -UGUGCUAGaaCUgCGCg--UCgCGCAGC- -5'
9265 3' -55.1 NC_002512.2 + 205936 0.68 0.920271
Target:  5'- aACGCGAagUUGuCGCGCGGCaGCcucagGUCGc -3'
miRNA:   3'- -UGUGCUagAACuGCGCGUCG-CG-----CAGC- -5'
9265 3' -55.1 NC_002512.2 + 213828 0.68 0.925627
Target:  5'- -gACGAgagUCUcGAgGCGCGGCGCGg-- -3'
miRNA:   3'- ugUGCU---AGAaCUgCGCGUCGCGCagc -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.