miRNA display CGI


Results 21 - 40 of 93 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9265 3' -55.1 NC_002512.2 + 86391 0.67 0.949012
Target:  5'- aGCACGGUCUgaacgGACGgGgGGUcCGUCu -3'
miRNA:   3'- -UGUGCUAGAa----CUGCgCgUCGcGCAGc -5'
9265 3' -55.1 NC_002512.2 + 99882 0.67 0.956807
Target:  5'- uGCugGAcCgggagGAgGCGCGGCcCGUCGa -3'
miRNA:   3'- -UGugCUaGaa---CUgCGCGUCGcGCAGC- -5'
9265 3' -55.1 NC_002512.2 + 82107 0.68 0.942141
Target:  5'- uCAUGGUCUUGAggcacuccagguccuCGCgGCugAGCGCGUCc -3'
miRNA:   3'- uGUGCUAGAACU---------------GCG-CG--UCGCGCAGc -5'
9265 3' -55.1 NC_002512.2 + 94674 0.68 0.925627
Target:  5'- gGCACGcUCUccGGCGCGCAGCuGCccUCGu -3'
miRNA:   3'- -UGUGCuAGAa-CUGCGCGUCG-CGc-AGC- -5'
9265 3' -55.1 NC_002512.2 + 30662 0.66 0.975214
Target:  5'- uGCGCcgGAUCUac-CGgGCGGCGCgGUCGg -3'
miRNA:   3'- -UGUG--CUAGAacuGCgCGUCGCG-CAGC- -5'
9265 3' -55.1 NC_002512.2 + 131016 0.66 0.966909
Target:  5'- ----cGUCUUcGACGCGCucgAGgGCGUCGg -3'
miRNA:   3'- ugugcUAGAA-CUGCGCG---UCgCGCAGC- -5'
9265 3' -55.1 NC_002512.2 + 101596 0.69 0.89659
Target:  5'- cCGCGGUCgu-GCGgGCGGC-CGUCGg -3'
miRNA:   3'- uGUGCUAGaacUGCgCGUCGcGCAGC- -5'
9265 3' -55.1 NC_002512.2 + 24852 0.67 0.949012
Target:  5'- gGC-CGGUCggcggcgGACGCgGCcccgaccgaGGCGCGUCGu -3'
miRNA:   3'- -UGuGCUAGaa-----CUGCG-CG---------UCGCGCAGC- -5'
9265 3' -55.1 NC_002512.2 + 35982 0.67 0.944784
Target:  5'- gACGCGAUCcgccGAC-CGCGGCgacccgcucccGCGUCGu -3'
miRNA:   3'- -UGUGCUAGaa--CUGcGCGUCG-----------CGCAGC- -5'
9265 3' -55.1 NC_002512.2 + 104791 0.7 0.876524
Target:  5'- gGCGgGGUCc--GCGCGCGGCGgGUUGu -3'
miRNA:   3'- -UGUgCUAGaacUGCGCGUCGCgCAGC- -5'
9265 3' -55.1 NC_002512.2 + 90115 0.66 0.966909
Target:  5'- uCugGAUCgcgGGCGCcCGGUGCG-CGa -3'
miRNA:   3'- uGugCUAGaa-CUGCGcGUCGCGCaGC- -5'
9265 3' -55.1 NC_002512.2 + 36617 0.66 0.975214
Target:  5'- aGCACaGGUCgccgaggcagGGCGCGCAG-GCGUa- -3'
miRNA:   3'- -UGUG-CUAGaa--------CUGCGCGUCgCGCAgc -5'
9265 3' -55.1 NC_002512.2 + 58965 0.67 0.953018
Target:  5'- cGCGCGGcagcaucggCUcGAaGCGCAGCGUGUCc -3'
miRNA:   3'- -UGUGCUa--------GAaCUgCGCGUCGCGCAGc -5'
9265 3' -55.1 NC_002512.2 + 75586 0.68 0.930756
Target:  5'- uCGCGGUCgacgUGGCGgcuuuCGC-GCGCGUCu -3'
miRNA:   3'- uGUGCUAGa---ACUGC-----GCGuCGCGCAGc -5'
9265 3' -55.1 NC_002512.2 + 37596 0.68 0.925627
Target:  5'- aACACGAgcaggaUGACGaCGCAGaGCGUCc -3'
miRNA:   3'- -UGUGCUaga---ACUGC-GCGUCgCGCAGc -5'
9265 3' -55.1 NC_002512.2 + 124635 0.7 0.862103
Target:  5'- cCugGAUCcgGGUGCGCGGCGCGgCGc -3'
miRNA:   3'- uGugCUAGaaCUGCGCGUCGCGCaGC- -5'
9265 3' -55.1 NC_002512.2 + 105047 0.67 0.944784
Target:  5'- uCGCGGgccucgCUcGGCGacgGCGGCGUGUCGg -3'
miRNA:   3'- uGUGCUa-----GAaCUGCg--CGUCGCGCAGC- -5'
9265 3' -55.1 NC_002512.2 + 21285 0.67 0.952627
Target:  5'- aGCACGGaaccucgaccucgUCccgGACcCGCuGCGCGUCGa -3'
miRNA:   3'- -UGUGCU-------------AGaa-CUGcGCGuCGCGCAGC- -5'
9265 3' -55.1 NC_002512.2 + 15467 0.7 0.869415
Target:  5'- gACGCGGUCcucGgGCGCGGCGCGcUCc -3'
miRNA:   3'- -UGUGCUAGaacUgCGCGUCGCGC-AGc -5'
9265 3' -55.1 NC_002512.2 + 78258 0.66 0.969293
Target:  5'- gACGCGAUCggcccuccugacgUUguucuccGACGCGCGGacCGUGUCGu -3'
miRNA:   3'- -UGUGCUAG-------------AA-------CUGCGCGUC--GCGCAGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.