miRNA display CGI


Results 21 - 40 of 93 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9265 3' -55.1 NC_002512.2 + 15467 0.7 0.869415
Target:  5'- gACGCGGUCcucGgGCGCGGCGCGcUCc -3'
miRNA:   3'- -UGUGCUAGaacUgCGCGUCGCGC-AGc -5'
9265 3' -55.1 NC_002512.2 + 133088 0.7 0.869415
Target:  5'- ---gGGUCcggUUGGCGCGCAGCGacucccCGUCGg -3'
miRNA:   3'- ugugCUAG---AACUGCGCGUCGC------GCAGC- -5'
9265 3' -55.1 NC_002512.2 + 219800 0.7 0.869415
Target:  5'- gACACaGAUagggGACGCGCGGgGCG-CGa -3'
miRNA:   3'- -UGUG-CUAgaa-CUGCGCGUCgCGCaGC- -5'
9265 3' -55.1 NC_002512.2 + 104791 0.7 0.876524
Target:  5'- gGCGgGGUCc--GCGCGCGGCGgGUUGu -3'
miRNA:   3'- -UGUgCUAGaacUGCGCGUCGCgCAGC- -5'
9265 3' -55.1 NC_002512.2 + 67261 0.69 0.883426
Target:  5'- uACGCGAUgUacacgucgcccaUGACGCGCugGGCG-GUCGa -3'
miRNA:   3'- -UGUGCUAgA------------ACUGCGCG--UCGCgCAGC- -5'
9265 3' -55.1 NC_002512.2 + 223811 0.69 0.890116
Target:  5'- -gGCGAcCgccggGACGaCGaCGGCGCGUCGg -3'
miRNA:   3'- ugUGCUaGaa---CUGC-GC-GUCGCGCAGC- -5'
9265 3' -55.1 NC_002512.2 + 101596 0.69 0.89659
Target:  5'- cCGCGGUCgu-GCGgGCGGC-CGUCGg -3'
miRNA:   3'- uGUGCUAGaacUGCgCGUCGcGCAGC- -5'
9265 3' -55.1 NC_002512.2 + 90937 0.69 0.89659
Target:  5'- gGCGCGAcCggGGCGUGCgugGGCGCGaCGa -3'
miRNA:   3'- -UGUGCUaGaaCUGCGCG---UCGCGCaGC- -5'
9265 3' -55.1 NC_002512.2 + 103091 0.69 0.902845
Target:  5'- -gGCGAUCccgggGACggGCGCGGCacGCGUCGc -3'
miRNA:   3'- ugUGCUAGaa---CUG--CGCGUCG--CGCAGC- -5'
9265 3' -55.1 NC_002512.2 + 129234 0.69 0.908878
Target:  5'- cGCGCGAUCgcggGACugcuGCGCGGgGCGaUCc -3'
miRNA:   3'- -UGUGCUAGaa--CUG----CGCGUCgCGC-AGc -5'
9265 3' -55.1 NC_002512.2 + 92133 0.69 0.908878
Target:  5'- gACACGcugcgGGCGCuGCGGCGCGUg- -3'
miRNA:   3'- -UGUGCuagaaCUGCG-CGUCGCGCAgc -5'
9265 3' -55.1 NC_002512.2 + 221256 0.69 0.908878
Target:  5'- cCGCGGcggaagUCggggGACGCGgGGCGCGUgGa -3'
miRNA:   3'- uGUGCU------AGaa--CUGCGCgUCGCGCAgC- -5'
9265 3' -55.1 NC_002512.2 + 75231 0.68 0.914688
Target:  5'- aACGCcGUCgcggUGACgaGCGCGGCcGCGUCc -3'
miRNA:   3'- -UGUGcUAGa---ACUG--CGCGUCG-CGCAGc -5'
9265 3' -55.1 NC_002512.2 + 148064 0.68 0.914688
Target:  5'- gGCA-GAUCgaGACGCGCcGCG-GUCGu -3'
miRNA:   3'- -UGUgCUAGaaCUGCGCGuCGCgCAGC- -5'
9265 3' -55.1 NC_002512.2 + 228092 0.68 0.920271
Target:  5'- cACACGGUCggGA-GCGaggAGgGCGUCGg -3'
miRNA:   3'- -UGUGCUAGaaCUgCGCg--UCgCGCAGC- -5'
9265 3' -55.1 NC_002512.2 + 205936 0.68 0.920271
Target:  5'- aACGCGAagUUGuCGCGCGGCaGCcucagGUCGc -3'
miRNA:   3'- -UGUGCUagAACuGCGCGUCG-CG-----CAGC- -5'
9265 3' -55.1 NC_002512.2 + 152444 0.68 0.920271
Target:  5'- -gGCGAUUUcgacgGGCGCGCGGCguugggagGCGUCc -3'
miRNA:   3'- ugUGCUAGAa----CUGCGCGUCG--------CGCAGc -5'
9265 3' -55.1 NC_002512.2 + 91952 0.68 0.925627
Target:  5'- gGCGCGAUCgccagGGCGgaGCGGCaCGUCc -3'
miRNA:   3'- -UGUGCUAGaa---CUGCg-CGUCGcGCAGc -5'
9265 3' -55.1 NC_002512.2 + 213828 0.68 0.925627
Target:  5'- -gACGAgagUCUcGAgGCGCGGCGCGg-- -3'
miRNA:   3'- ugUGCU---AGAaCUgCGCGUCGCGCagc -5'
9265 3' -55.1 NC_002512.2 + 216347 0.68 0.925627
Target:  5'- gGCuCGAUCUUGGugaagUGCGUGGUGCGcCGc -3'
miRNA:   3'- -UGuGCUAGAACU-----GCGCGUCGCGCaGC- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.