miRNA display CGI


Results 1 - 20 of 93 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9265 3' -55.1 NC_002512.2 + 62703 1.07 0.007189
Target:  5'- uACACGAUCUUGACGCGCAGCGCGUCGc -3'
miRNA:   3'- -UGUGCUAGAACUGCGCGUCGCGCAGC- -5'
9265 3' -55.1 NC_002512.2 + 180761 0.8 0.344331
Target:  5'- cCGCGAUCUUGGCGUGCAGC-CGggCGa -3'
miRNA:   3'- uGUGCUAGAACUGCGCGUCGcGCa-GC- -5'
9265 3' -55.1 NC_002512.2 + 101119 0.78 0.43383
Target:  5'- gGCGCGG-CgUGcgcuCGCGCAGCGCGUCGu -3'
miRNA:   3'- -UGUGCUaGaACu---GCGCGUCGCGCAGC- -5'
9265 3' -55.1 NC_002512.2 + 105458 0.76 0.564671
Target:  5'- gACAUGAUCUUGAcCGCGUacauGGCGaCGUCc -3'
miRNA:   3'- -UGUGCUAGAACU-GCGCG----UCGC-GCAGc -5'
9265 3' -55.1 NC_002512.2 + 200830 0.76 0.574514
Target:  5'- gACGCGAaggUCagcgGGgGCGCGGCGCGUCu -3'
miRNA:   3'- -UGUGCU---AGaa--CUgCGCGUCGCGCAGc -5'
9265 3' -55.1 NC_002512.2 + 94410 0.76 0.574514
Target:  5'- -gGCGGUCUUGGCGCuccaguCGGCcGCGUCGa -3'
miRNA:   3'- ugUGCUAGAACUGCGc-----GUCG-CGCAGC- -5'
9265 3' -55.1 NC_002512.2 + 135902 0.75 0.624183
Target:  5'- gACGCGuUCgcgGACGCGCAGCGacaCGUCc -3'
miRNA:   3'- -UGUGCuAGaa-CUGCGCGUCGC---GCAGc -5'
9265 3' -55.1 NC_002512.2 + 11004 0.74 0.683881
Target:  5'- cGCGCGAUgagGGCGCGCAcgGCGUCGg -3'
miRNA:   3'- -UGUGCUAgaaCUGCGCGUcgCGCAGC- -5'
9265 3' -55.1 NC_002512.2 + 167163 0.73 0.732579
Target:  5'- cCGCGAggccgUCgaccgcGACGCGCuGCGCGUCa -3'
miRNA:   3'- uGUGCU-----AGaa----CUGCGCGuCGCGCAGc -5'
9265 3' -55.1 NC_002512.2 + 216030 0.72 0.760872
Target:  5'- aGCGCGGUauagGGCGCGCgAGUGCGaCGg -3'
miRNA:   3'- -UGUGCUAgaa-CUGCGCG-UCGCGCaGC- -5'
9265 3' -55.1 NC_002512.2 + 188915 0.72 0.777394
Target:  5'- cGCGCGGUCggagagucccgGugGCGgGGCGCGgCGg -3'
miRNA:   3'- -UGUGCUAGaa---------CugCGCgUCGCGCaGC- -5'
9265 3' -55.1 NC_002512.2 + 221456 0.72 0.779206
Target:  5'- gGCGCGGUCguccgaccgGcCGCGguGCGCGUUc -3'
miRNA:   3'- -UGUGCUAGaa-------CuGCGCguCGCGCAGc -5'
9265 3' -55.1 NC_002512.2 + 112876 0.71 0.822706
Target:  5'- -gAUGAUCUUGcgcccgcccuGCGUGCGGC-CGUCGg -3'
miRNA:   3'- ugUGCUAGAAC----------UGCGCGUCGcGCAGC- -5'
9265 3' -55.1 NC_002512.2 + 208576 0.7 0.839008
Target:  5'- gGC-CGAguc-GACGCGCAGCGgGUCc -3'
miRNA:   3'- -UGuGCUagaaCUGCGCGUCGCgCAGc -5'
9265 3' -55.1 NC_002512.2 + 98168 0.7 0.839008
Target:  5'- cCGCGGUCUgGACggGCGCGGCGacCGUCc -3'
miRNA:   3'- uGUGCUAGAaCUG--CGCGUCGC--GCAGc -5'
9265 3' -55.1 NC_002512.2 + 216478 0.7 0.846894
Target:  5'- -gGCG-UCccacaggGAgGCGCAGCGCGUCa -3'
miRNA:   3'- ugUGCuAGaa-----CUgCGCGUCGCGCAGc -5'
9265 3' -55.1 NC_002512.2 + 124635 0.7 0.862103
Target:  5'- cCugGAUCcgGGUGCGCGGCGCGgCGc -3'
miRNA:   3'- uGugCUAGaaCUGCGCGUCGCGCaGC- -5'
9265 3' -55.1 NC_002512.2 + 178560 0.7 0.862103
Target:  5'- uCACGAUCcgGuuGUGguGCGCGUCc -3'
miRNA:   3'- uGUGCUAGaaCugCGCguCGCGCAGc -5'
9265 3' -55.1 NC_002512.2 + 131291 0.7 0.862103
Target:  5'- -gACGG-CUgGACGUGCAGCGCGg-- -3'
miRNA:   3'- ugUGCUaGAaCUGCGCGUCGCGCagc -5'
9265 3' -55.1 NC_002512.2 + 114330 0.7 0.862103
Target:  5'- -aGCGuUCUUGACGCGCgcGGCGgG-CGa -3'
miRNA:   3'- ugUGCuAGAACUGCGCG--UCGCgCaGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.