miRNA display CGI


Results 1 - 20 of 93 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9265 3' -55.1 NC_002512.2 + 4650 0.66 0.969869
Target:  5'- aGCACGGgagcgGAggcccCGC-CGGCGCGUCGa -3'
miRNA:   3'- -UGUGCUagaa-CU-----GCGcGUCGCGCAGC- -5'
9265 3' -55.1 NC_002512.2 + 11004 0.74 0.683881
Target:  5'- cGCGCGAUgagGGCGCGCAcgGCGUCGg -3'
miRNA:   3'- -UGUGCUAgaaCUGCGCGUcgCGCAGC- -5'
9265 3' -55.1 NC_002512.2 + 15467 0.7 0.869415
Target:  5'- gACGCGGUCcucGgGCGCGGCGCGcUCc -3'
miRNA:   3'- -UGUGCUAGaacUgCGCGUCGCGC-AGc -5'
9265 3' -55.1 NC_002512.2 + 21285 0.67 0.952627
Target:  5'- aGCACGGaaccucgaccucgUCccgGACcCGCuGCGCGUCGa -3'
miRNA:   3'- -UGUGCU-------------AGaa-CUGcGCGuCGCGCAGC- -5'
9265 3' -55.1 NC_002512.2 + 24852 0.67 0.949012
Target:  5'- gGC-CGGUCggcggcgGACGCgGCcccgaccgaGGCGCGUCGu -3'
miRNA:   3'- -UGuGCUAGaa-----CUGCG-CG---------UCGCGCAGC- -5'
9265 3' -55.1 NC_002512.2 + 30662 0.66 0.975214
Target:  5'- uGCGCcgGAUCUac-CGgGCGGCGCgGUCGg -3'
miRNA:   3'- -UGUG--CUAGAacuGCgCGUCGCG-CAGC- -5'
9265 3' -55.1 NC_002512.2 + 31818 0.68 0.930756
Target:  5'- gGCGCGGUCgagggGACGCGCgAGa-CGUCc -3'
miRNA:   3'- -UGUGCUAGaa---CUGCGCG-UCgcGCAGc -5'
9265 3' -55.1 NC_002512.2 + 35982 0.67 0.944784
Target:  5'- gACGCGAUCcgccGAC-CGCGGCgacccgcucccGCGUCGu -3'
miRNA:   3'- -UGUGCUAGaa--CUGcGCGUCG-----------CGCAGC- -5'
9265 3' -55.1 NC_002512.2 + 36617 0.66 0.975214
Target:  5'- aGCACaGGUCgccgaggcagGGCGCGCAG-GCGUa- -3'
miRNA:   3'- -UGUG-CUAGaa--------CUGCGCGUCgCGCAgc -5'
9265 3' -55.1 NC_002512.2 + 37596 0.68 0.925627
Target:  5'- aACACGAgcaggaUGACGaCGCAGaGCGUCc -3'
miRNA:   3'- -UGUGCUaga---ACUGC-GCGUCgCGCAGc -5'
9265 3' -55.1 NC_002512.2 + 43040 0.67 0.953018
Target:  5'- gGCGCaGGUCcucggcGACGCGCAGgGCcUCGc -3'
miRNA:   3'- -UGUG-CUAGaa----CUGCGCGUCgCGcAGC- -5'
9265 3' -55.1 NC_002512.2 + 50210 0.68 0.940334
Target:  5'- cGCgACGAUCguguaccaccUGGCGCuGacaAGCGCGUCGc -3'
miRNA:   3'- -UG-UGCUAGa---------ACUGCG-Cg--UCGCGCAGC- -5'
9265 3' -55.1 NC_002512.2 + 58965 0.67 0.953018
Target:  5'- cGCGCGGcagcaucggCUcGAaGCGCAGCGUGUCc -3'
miRNA:   3'- -UGUGCUa--------GAaCUgCGCGUCGCGCAGc -5'
9265 3' -55.1 NC_002512.2 + 62703 1.07 0.007189
Target:  5'- uACACGAUCUUGACGCGCAGCGCGUCGc -3'
miRNA:   3'- -UGUGCUAGAACUGCGCGUCGCGCAGC- -5'
9265 3' -55.1 NC_002512.2 + 67261 0.69 0.883426
Target:  5'- uACGCGAUgUacacgucgcccaUGACGCGCugGGCG-GUCGa -3'
miRNA:   3'- -UGUGCUAgA------------ACUGCGCG--UCGCgCAGC- -5'
9265 3' -55.1 NC_002512.2 + 75231 0.68 0.914688
Target:  5'- aACGCcGUCgcggUGACgaGCGCGGCcGCGUCc -3'
miRNA:   3'- -UGUGcUAGa---ACUG--CGCGUCG-CGCAGc -5'
9265 3' -55.1 NC_002512.2 + 75586 0.68 0.930756
Target:  5'- uCGCGGUCgacgUGGCGgcuuuCGC-GCGCGUCu -3'
miRNA:   3'- uGUGCUAGa---ACUGC-----GCGuCGCGCAGc -5'
9265 3' -55.1 NC_002512.2 + 75642 0.67 0.953018
Target:  5'- cACGCGggCgcu-CGCGC-GCGCGUCc -3'
miRNA:   3'- -UGUGCuaGaacuGCGCGuCGCGCAGc -5'
9265 3' -55.1 NC_002512.2 + 78258 0.66 0.969293
Target:  5'- gACGCGAUCggcccuccugacgUUguucuccGACGCGCGGacCGUGUCGu -3'
miRNA:   3'- -UGUGCUAG-------------AA-------CUGCGCGUC--GCGCAGC- -5'
9265 3' -55.1 NC_002512.2 + 80849 0.66 0.97761
Target:  5'- -gGCGAgccUCggGACGCGgGGCucgGUGUCGg -3'
miRNA:   3'- ugUGCU---AGaaCUGCGCgUCG---CGCAGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.