miRNA display CGI


Results 21 - 40 of 93 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9265 3' -55.1 NC_002512.2 + 82107 0.68 0.942141
Target:  5'- uCAUGGUCUUGAggcacuccagguccuCGCgGCugAGCGCGUCc -3'
miRNA:   3'- uGUGCUAGAACU---------------GCG-CG--UCGCGCAGc -5'
9265 3' -55.1 NC_002512.2 + 86391 0.67 0.949012
Target:  5'- aGCACGGUCUgaacgGACGgGgGGUcCGUCu -3'
miRNA:   3'- -UGUGCUAGAa----CUGCgCgUCGcGCAGc -5'
9265 3' -55.1 NC_002512.2 + 87690 0.66 0.972636
Target:  5'- gAC-CGA-CggGACGCGCGGCGaCG-CGg -3'
miRNA:   3'- -UGuGCUaGaaCUGCGCGUCGC-GCaGC- -5'
9265 3' -55.1 NC_002512.2 + 89004 0.66 0.966909
Target:  5'- aGCGCGGg---GACGUcggGCAGCGCGaUCc -3'
miRNA:   3'- -UGUGCUagaaCUGCG---CGUCGCGC-AGc -5'
9265 3' -55.1 NC_002512.2 + 90115 0.66 0.966909
Target:  5'- uCugGAUCgcgGGCGCcCGGUGCG-CGa -3'
miRNA:   3'- uGugCUAGaa-CUGCGcGUCGCGCaGC- -5'
9265 3' -55.1 NC_002512.2 + 90239 0.68 0.930756
Target:  5'- -gACGAUgUUGGCGUcccucgucgaGCAGUGCGUgGu -3'
miRNA:   3'- ugUGCUAgAACUGCG----------CGUCGCGCAgC- -5'
9265 3' -55.1 NC_002512.2 + 90937 0.69 0.89659
Target:  5'- gGCGCGAcCggGGCGUGCgugGGCGCGaCGa -3'
miRNA:   3'- -UGUGCUaGaaCUGCGCG---UCGCGCaGC- -5'
9265 3' -55.1 NC_002512.2 + 91952 0.68 0.925627
Target:  5'- gGCGCGAUCgccagGGCGgaGCGGCaCGUCc -3'
miRNA:   3'- -UGUGCUAGaa---CUGCg-CGUCGcGCAGc -5'
9265 3' -55.1 NC_002512.2 + 92133 0.69 0.908878
Target:  5'- gACACGcugcgGGCGCuGCGGCGCGUg- -3'
miRNA:   3'- -UGUGCuagaaCUGCG-CGUCGCGCAgc -5'
9265 3' -55.1 NC_002512.2 + 93056 0.68 0.935658
Target:  5'- -aGCGAgac-GACGcCGCGGgGCGUCGu -3'
miRNA:   3'- ugUGCUagaaCUGC-GCGUCgCGCAGC- -5'
9265 3' -55.1 NC_002512.2 + 93702 0.66 0.966909
Target:  5'- gACGCGAUCccGGCGacccCGCcGCGCGgCGg -3'
miRNA:   3'- -UGUGCUAGaaCUGC----GCGuCGCGCaGC- -5'
9265 3' -55.1 NC_002512.2 + 94410 0.76 0.574514
Target:  5'- -gGCGGUCUUGGCGCuccaguCGGCcGCGUCGa -3'
miRNA:   3'- ugUGCUAGAACUGCGc-----GUCG-CGCAGC- -5'
9265 3' -55.1 NC_002512.2 + 94674 0.68 0.925627
Target:  5'- gGCACGcUCUccGGCGCGCAGCuGCccUCGu -3'
miRNA:   3'- -UGUGCuAGAa-CUGCGCGUCG-CGc-AGC- -5'
9265 3' -55.1 NC_002512.2 + 98168 0.7 0.839008
Target:  5'- cCGCGGUCUgGACggGCGCGGCGacCGUCc -3'
miRNA:   3'- uGUGCUAGAaCUG--CGCGUCGC--GCAGc -5'
9265 3' -55.1 NC_002512.2 + 99882 0.67 0.956807
Target:  5'- uGCugGAcCgggagGAgGCGCGGCcCGUCGa -3'
miRNA:   3'- -UGugCUaGaa---CUgCGCGUCGcGCAGC- -5'
9265 3' -55.1 NC_002512.2 + 101119 0.78 0.43383
Target:  5'- gGCGCGG-CgUGcgcuCGCGCAGCGCGUCGu -3'
miRNA:   3'- -UGUGCUaGaACu---GCGCGUCGCGCAGC- -5'
9265 3' -55.1 NC_002512.2 + 101596 0.69 0.89659
Target:  5'- cCGCGGUCgu-GCGgGCGGC-CGUCGg -3'
miRNA:   3'- uGUGCUAGaacUGCgCGUCGcGCAGC- -5'
9265 3' -55.1 NC_002512.2 + 103091 0.69 0.902845
Target:  5'- -gGCGAUCccgggGACggGCGCGGCacGCGUCGc -3'
miRNA:   3'- ugUGCUAGaa---CUG--CGCGUCG--CGCAGC- -5'
9265 3' -55.1 NC_002512.2 + 103495 0.67 0.949012
Target:  5'- cCGCGGaccgCUcGcCGgGCAGCGCGUUGg -3'
miRNA:   3'- uGUGCUa---GAaCuGCgCGUCGCGCAGC- -5'
9265 3' -55.1 NC_002512.2 + 104791 0.7 0.876524
Target:  5'- gGCGgGGUCc--GCGCGCGGCGgGUUGu -3'
miRNA:   3'- -UGUgCUAGaacUGCGCGUCGCgCAGC- -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.