Results 21 - 40 of 93 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand |
Start Position![]() |
R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
9265 | 3' | -55.1 | NC_002512.2 | + | 82107 | 0.68 | 0.942141 |
Target: 5'- uCAUGGUCUUGAggcacuccagguccuCGCgGCugAGCGCGUCc -3' miRNA: 3'- uGUGCUAGAACU---------------GCG-CG--UCGCGCAGc -5' |
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9265 | 3' | -55.1 | NC_002512.2 | + | 86391 | 0.67 | 0.949012 |
Target: 5'- aGCACGGUCUgaacgGACGgGgGGUcCGUCu -3' miRNA: 3'- -UGUGCUAGAa----CUGCgCgUCGcGCAGc -5' |
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9265 | 3' | -55.1 | NC_002512.2 | + | 87690 | 0.66 | 0.972636 |
Target: 5'- gAC-CGA-CggGACGCGCGGCGaCG-CGg -3' miRNA: 3'- -UGuGCUaGaaCUGCGCGUCGC-GCaGC- -5' |
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9265 | 3' | -55.1 | NC_002512.2 | + | 89004 | 0.66 | 0.966909 |
Target: 5'- aGCGCGGg---GACGUcggGCAGCGCGaUCc -3' miRNA: 3'- -UGUGCUagaaCUGCG---CGUCGCGC-AGc -5' |
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9265 | 3' | -55.1 | NC_002512.2 | + | 90115 | 0.66 | 0.966909 |
Target: 5'- uCugGAUCgcgGGCGCcCGGUGCG-CGa -3' miRNA: 3'- uGugCUAGaa-CUGCGcGUCGCGCaGC- -5' |
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9265 | 3' | -55.1 | NC_002512.2 | + | 90239 | 0.68 | 0.930756 |
Target: 5'- -gACGAUgUUGGCGUcccucgucgaGCAGUGCGUgGu -3' miRNA: 3'- ugUGCUAgAACUGCG----------CGUCGCGCAgC- -5' |
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9265 | 3' | -55.1 | NC_002512.2 | + | 90937 | 0.69 | 0.89659 |
Target: 5'- gGCGCGAcCggGGCGUGCgugGGCGCGaCGa -3' miRNA: 3'- -UGUGCUaGaaCUGCGCG---UCGCGCaGC- -5' |
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9265 | 3' | -55.1 | NC_002512.2 | + | 91952 | 0.68 | 0.925627 |
Target: 5'- gGCGCGAUCgccagGGCGgaGCGGCaCGUCc -3' miRNA: 3'- -UGUGCUAGaa---CUGCg-CGUCGcGCAGc -5' |
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9265 | 3' | -55.1 | NC_002512.2 | + | 92133 | 0.69 | 0.908878 |
Target: 5'- gACACGcugcgGGCGCuGCGGCGCGUg- -3' miRNA: 3'- -UGUGCuagaaCUGCG-CGUCGCGCAgc -5' |
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9265 | 3' | -55.1 | NC_002512.2 | + | 93056 | 0.68 | 0.935658 |
Target: 5'- -aGCGAgac-GACGcCGCGGgGCGUCGu -3' miRNA: 3'- ugUGCUagaaCUGC-GCGUCgCGCAGC- -5' |
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9265 | 3' | -55.1 | NC_002512.2 | + | 93702 | 0.66 | 0.966909 |
Target: 5'- gACGCGAUCccGGCGacccCGCcGCGCGgCGg -3' miRNA: 3'- -UGUGCUAGaaCUGC----GCGuCGCGCaGC- -5' |
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9265 | 3' | -55.1 | NC_002512.2 | + | 94410 | 0.76 | 0.574514 |
Target: 5'- -gGCGGUCUUGGCGCuccaguCGGCcGCGUCGa -3' miRNA: 3'- ugUGCUAGAACUGCGc-----GUCG-CGCAGC- -5' |
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9265 | 3' | -55.1 | NC_002512.2 | + | 94674 | 0.68 | 0.925627 |
Target: 5'- gGCACGcUCUccGGCGCGCAGCuGCccUCGu -3' miRNA: 3'- -UGUGCuAGAa-CUGCGCGUCG-CGc-AGC- -5' |
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9265 | 3' | -55.1 | NC_002512.2 | + | 98168 | 0.7 | 0.839008 |
Target: 5'- cCGCGGUCUgGACggGCGCGGCGacCGUCc -3' miRNA: 3'- uGUGCUAGAaCUG--CGCGUCGC--GCAGc -5' |
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9265 | 3' | -55.1 | NC_002512.2 | + | 99882 | 0.67 | 0.956807 |
Target: 5'- uGCugGAcCgggagGAgGCGCGGCcCGUCGa -3' miRNA: 3'- -UGugCUaGaa---CUgCGCGUCGcGCAGC- -5' |
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9265 | 3' | -55.1 | NC_002512.2 | + | 101119 | 0.78 | 0.43383 |
Target: 5'- gGCGCGG-CgUGcgcuCGCGCAGCGCGUCGu -3' miRNA: 3'- -UGUGCUaGaACu---GCGCGUCGCGCAGC- -5' |
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9265 | 3' | -55.1 | NC_002512.2 | + | 101596 | 0.69 | 0.89659 |
Target: 5'- cCGCGGUCgu-GCGgGCGGC-CGUCGg -3' miRNA: 3'- uGUGCUAGaacUGCgCGUCGcGCAGC- -5' |
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9265 | 3' | -55.1 | NC_002512.2 | + | 103091 | 0.69 | 0.902845 |
Target: 5'- -gGCGAUCccgggGACggGCGCGGCacGCGUCGc -3' miRNA: 3'- ugUGCUAGaa---CUG--CGCGUCG--CGCAGC- -5' |
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9265 | 3' | -55.1 | NC_002512.2 | + | 103495 | 0.67 | 0.949012 |
Target: 5'- cCGCGGaccgCUcGcCGgGCAGCGCGUUGg -3' miRNA: 3'- uGUGCUa---GAaCuGCgCGUCGCGCAGC- -5' |
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9265 | 3' | -55.1 | NC_002512.2 | + | 104791 | 0.7 | 0.876524 |
Target: 5'- gGCGgGGUCc--GCGCGCGGCGgGUUGu -3' miRNA: 3'- -UGUgCUAGaacUGCGCGUCGCgCAGC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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