miRNA display CGI


Results 1 - 20 of 93 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9265 3' -55.1 NC_002512.2 + 75586 0.68 0.930756
Target:  5'- uCGCGGUCgacgUGGCGgcuuuCGC-GCGCGUCu -3'
miRNA:   3'- uGUGCUAGa---ACUGC-----GCGuCGCGCAGc -5'
9265 3' -55.1 NC_002512.2 + 62703 1.07 0.007189
Target:  5'- uACACGAUCUUGACGCGCAGCGCGUCGc -3'
miRNA:   3'- -UGUGCUAGAACUGCGCGUCGCGCAGC- -5'
9265 3' -55.1 NC_002512.2 + 101119 0.78 0.43383
Target:  5'- gGCGCGG-CgUGcgcuCGCGCAGCGCGUCGu -3'
miRNA:   3'- -UGUGCUaGaACu---GCGCGUCGCGCAGC- -5'
9265 3' -55.1 NC_002512.2 + 103091 0.69 0.902845
Target:  5'- -gGCGAUCccgggGACggGCGCGGCacGCGUCGc -3'
miRNA:   3'- ugUGCUAGaa---CUG--CGCGUCG--CGCAGC- -5'
9265 3' -55.1 NC_002512.2 + 152444 0.68 0.920271
Target:  5'- -gGCGAUUUcgacgGGCGCGCGGCguugggagGCGUCc -3'
miRNA:   3'- ugUGCUAGAa----CUGCGCGUCG--------CGCAGc -5'
9265 3' -55.1 NC_002512.2 + 135902 0.75 0.624183
Target:  5'- gACGCGuUCgcgGACGCGCAGCGacaCGUCc -3'
miRNA:   3'- -UGUGCuAGaa-CUGCGCGUCGC---GCAGc -5'
9265 3' -55.1 NC_002512.2 + 104791 0.7 0.876524
Target:  5'- gGCGgGGUCc--GCGCGCGGCGgGUUGu -3'
miRNA:   3'- -UGUgCUAGaacUGCGCGUCGCgCAGC- -5'
9265 3' -55.1 NC_002512.2 + 101596 0.69 0.89659
Target:  5'- cCGCGGUCgu-GCGgGCGGC-CGUCGg -3'
miRNA:   3'- uGUGCUAGaacUGCgCGUCGcGCAGC- -5'
9265 3' -55.1 NC_002512.2 + 137776 0.68 0.927706
Target:  5'- cCGCGGUCUggaggucggcgcucGGCGgGCcGCGCGUCc -3'
miRNA:   3'- uGUGCUAGAa-------------CUGCgCGuCGCGCAGc -5'
9265 3' -55.1 NC_002512.2 + 93056 0.68 0.935658
Target:  5'- -aGCGAgac-GACGcCGCGGgGCGUCGu -3'
miRNA:   3'- ugUGCUagaaCUGC-GCGUCgCGCAGC- -5'
9265 3' -55.1 NC_002512.2 + 80849 0.66 0.97761
Target:  5'- -gGCGAgccUCggGACGCGgGGCucgGUGUCGg -3'
miRNA:   3'- ugUGCU---AGaaCUGCGCgUCG---CGCAGC- -5'
9265 3' -55.1 NC_002512.2 + 124635 0.7 0.862103
Target:  5'- cCugGAUCcgGGUGCGCGGCGCGgCGc -3'
miRNA:   3'- uGugCUAGaaCUGCGCGUCGCGCaGC- -5'
9265 3' -55.1 NC_002512.2 + 11004 0.74 0.683881
Target:  5'- cGCGCGAUgagGGCGCGCAcgGCGUCGg -3'
miRNA:   3'- -UGUGCUAgaaCUGCGCGUcgCGCAGC- -5'
9265 3' -55.1 NC_002512.2 + 94674 0.68 0.925627
Target:  5'- gGCACGcUCUccGGCGCGCAGCuGCccUCGu -3'
miRNA:   3'- -UGUGCuAGAa-CUGCGCGUCG-CGc-AGC- -5'
9265 3' -55.1 NC_002512.2 + 37596 0.68 0.925627
Target:  5'- aACACGAgcaggaUGACGaCGCAGaGCGUCc -3'
miRNA:   3'- -UGUGCUaga---ACUGC-GCGUCgCGCAGc -5'
9265 3' -55.1 NC_002512.2 + 15467 0.7 0.869415
Target:  5'- gACGCGGUCcucGgGCGCGGCGCGcUCc -3'
miRNA:   3'- -UGUGCUAGaacUgCGCGUCGCGC-AGc -5'
9265 3' -55.1 NC_002512.2 + 31818 0.68 0.930756
Target:  5'- gGCGCGGUCgagggGACGCGCgAGa-CGUCc -3'
miRNA:   3'- -UGUGCUAGaa---CUGCGCG-UCgcGCAGc -5'
9265 3' -55.1 NC_002512.2 + 50210 0.68 0.940334
Target:  5'- cGCgACGAUCguguaccaccUGGCGCuGacaAGCGCGUCGc -3'
miRNA:   3'- -UG-UGCUAGa---------ACUGCG-Cg--UCGCGCAGC- -5'
9265 3' -55.1 NC_002512.2 + 67261 0.69 0.883426
Target:  5'- uACGCGAUgUacacgucgcccaUGACGCGCugGGCG-GUCGa -3'
miRNA:   3'- -UGUGCUAgA------------ACUGCGCG--UCGCgCAGC- -5'
9265 3' -55.1 NC_002512.2 + 91952 0.68 0.925627
Target:  5'- gGCGCGAUCgccagGGCGgaGCGGCaCGUCc -3'
miRNA:   3'- -UGUGCUAGaa---CUGCg-CGUCGcGCAGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.