miRNA display CGI


Results 21 - 40 of 93 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9265 3' -55.1 NC_002512.2 + 140063 0.66 0.966909
Target:  5'- aGCGCGGUCUcGACGUccucuCGGCGCucaUCGg -3'
miRNA:   3'- -UGUGCUAGAaCUGCGc----GUCGCGc--AGC- -5'
9265 3' -55.1 NC_002512.2 + 89004 0.66 0.966909
Target:  5'- aGCGCGGg---GACGUcggGCAGCGCGaUCc -3'
miRNA:   3'- -UGUGCUagaaCUGCG---CGUCGCGC-AGc -5'
9265 3' -55.1 NC_002512.2 + 93702 0.66 0.966909
Target:  5'- gACGCGAUCccGGCGacccCGCcGCGCGgCGg -3'
miRNA:   3'- -UGUGCUAGaaCUGC----GCGuCGCGCaGC- -5'
9265 3' -55.1 NC_002512.2 + 179563 0.66 0.965037
Target:  5'- gGCuCGAUCUUcGGCG-GCGGCaggaucgcaucuuggGCGUCGa -3'
miRNA:   3'- -UGuGCUAGAA-CUGCgCGUCG---------------CGCAGC- -5'
9265 3' -55.1 NC_002512.2 + 170774 0.66 0.963748
Target:  5'- aGCGCGAcg--GGCGCGauCGGCGCGaCGa -3'
miRNA:   3'- -UGUGCUagaaCUGCGC--GUCGCGCaGC- -5'
9265 3' -55.1 NC_002512.2 + 198942 0.66 0.963748
Target:  5'- aACACGGUCaggGAccucagcgguCGCGUGGCgucGCGUCGc -3'
miRNA:   3'- -UGUGCUAGaa-CU----------GCGCGUCG---CGCAGC- -5'
9265 3' -55.1 NC_002512.2 + 172137 0.66 0.963748
Target:  5'- -gACGAggagCgcGACGgGCAGCGgGUCu -3'
miRNA:   3'- ugUGCUa---GaaCUGCgCGUCGCgCAGc -5'
9265 3' -55.1 NC_002512.2 + 122089 0.67 0.960383
Target:  5'- cGCACGcgCcgGACGCGagguCGGCGCugacGUCGg -3'
miRNA:   3'- -UGUGCuaGaaCUGCGC----GUCGCG----CAGC- -5'
9265 3' -55.1 NC_002512.2 + 99882 0.67 0.956807
Target:  5'- uGCugGAcCgggagGAgGCGCGGCcCGUCGa -3'
miRNA:   3'- -UGugCUaGaa---CUgCGCGUCGcGCAGC- -5'
9265 3' -55.1 NC_002512.2 + 43040 0.67 0.953018
Target:  5'- gGCGCaGGUCcucggcGACGCGCAGgGCcUCGc -3'
miRNA:   3'- -UGUG-CUAGaa----CUGCGCGUCgCGcAGC- -5'
9265 3' -55.1 NC_002512.2 + 58965 0.67 0.953018
Target:  5'- cGCGCGGcagcaucggCUcGAaGCGCAGCGUGUCc -3'
miRNA:   3'- -UGUGCUa--------GAaCUgCGCGUCGCGCAGc -5'
9265 3' -55.1 NC_002512.2 + 75642 0.67 0.953018
Target:  5'- cACGCGggCgcu-CGCGC-GCGCGUCc -3'
miRNA:   3'- -UGUGCuaGaacuGCGCGuCGCGCAGc -5'
9265 3' -55.1 NC_002512.2 + 21285 0.67 0.952627
Target:  5'- aGCACGGaaccucgaccucgUCccgGACcCGCuGCGCGUCGa -3'
miRNA:   3'- -UGUGCU-------------AGaa-CUGcGCGuCGCGCAGC- -5'
9265 3' -55.1 NC_002512.2 + 86391 0.67 0.949012
Target:  5'- aGCACGGUCUgaacgGACGgGgGGUcCGUCu -3'
miRNA:   3'- -UGUGCUAGAa----CUGCgCgUCGcGCAGc -5'
9265 3' -55.1 NC_002512.2 + 103495 0.67 0.949012
Target:  5'- cCGCGGaccgCUcGcCGgGCAGCGCGUUGg -3'
miRNA:   3'- uGUGCUa---GAaCuGCgCGUCGCGCAGC- -5'
9265 3' -55.1 NC_002512.2 + 24852 0.67 0.949012
Target:  5'- gGC-CGGUCggcggcgGACGCgGCcccgaccgaGGCGCGUCGu -3'
miRNA:   3'- -UGuGCUAGaa-----CUGCG-CG---------UCGCGCAGC- -5'
9265 3' -55.1 NC_002512.2 + 105047 0.67 0.944784
Target:  5'- uCGCGGgccucgCUcGGCGacgGCGGCGUGUCGg -3'
miRNA:   3'- uGUGCUa-----GAaCUGCg--CGUCGCGCAGC- -5'
9265 3' -55.1 NC_002512.2 + 35982 0.67 0.944784
Target:  5'- gACGCGAUCcgccGAC-CGCGGCgacccgcucccGCGUCGu -3'
miRNA:   3'- -UGUGCUAGaa--CUGcGCGUCG-----------CGCAGC- -5'
9265 3' -55.1 NC_002512.2 + 82107 0.68 0.942141
Target:  5'- uCAUGGUCUUGAggcacuccagguccuCGCgGCugAGCGCGUCc -3'
miRNA:   3'- uGUGCUAGAACU---------------GCG-CG--UCGCGCAGc -5'
9265 3' -55.1 NC_002512.2 + 50210 0.68 0.940334
Target:  5'- cGCgACGAUCguguaccaccUGGCGCuGacaAGCGCGUCGc -3'
miRNA:   3'- -UG-UGCUAGa---------ACUGCG-Cg--UCGCGCAGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.