Results 41 - 60 of 93 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand |
Start Position![]() |
R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
9265 | 3' | -55.1 | NC_002512.2 | + | 131016 | 0.66 | 0.966909 |
Target: 5'- ----cGUCUUcGACGCGCucgAGgGCGUCGg -3' miRNA: 3'- ugugcUAGAA-CUGCGCG---UCgCGCAGC- -5' |
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9265 | 3' | -55.1 | NC_002512.2 | + | 129234 | 0.69 | 0.908878 |
Target: 5'- cGCGCGAUCgcggGACugcuGCGCGGgGCGaUCc -3' miRNA: 3'- -UGUGCUAGaa--CUG----CGCGUCgCGC-AGc -5' |
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9265 | 3' | -55.1 | NC_002512.2 | + | 128047 | 0.68 | 0.930756 |
Target: 5'- uGCACGGcCccGACGguCGCGGCGuCGUCGu -3' miRNA: 3'- -UGUGCUaGaaCUGC--GCGUCGC-GCAGC- -5' |
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9265 | 3' | -55.1 | NC_002512.2 | + | 126740 | 0.66 | 0.976194 |
Target: 5'- gGCGCGugccUCUUGGCccgagacgccucgggGCGCGGCgGCGgCGg -3' miRNA: 3'- -UGUGCu---AGAACUG---------------CGCGUCG-CGCaGC- -5' |
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9265 | 3' | -55.1 | NC_002512.2 | + | 124635 | 0.7 | 0.862103 |
Target: 5'- cCugGAUCcgGGUGCGCGGCGCGgCGc -3' miRNA: 3'- uGugCUAGaaCUGCGCGUCGCGCaGC- -5' |
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9265 | 3' | -55.1 | NC_002512.2 | + | 123836 | 0.66 | 0.969869 |
Target: 5'- cGCACGAUCU--GCGCccGCGGCGaCGg-- -3' miRNA: 3'- -UGUGCUAGAacUGCG--CGUCGC-GCagc -5' |
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9265 | 3' | -55.1 | NC_002512.2 | + | 122089 | 0.67 | 0.960383 |
Target: 5'- cGCACGcgCcgGACGCGagguCGGCGCugacGUCGg -3' miRNA: 3'- -UGUGCuaGaaCUGCGC----GUCGCG----CAGC- -5' |
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9265 | 3' | -55.1 | NC_002512.2 | + | 118550 | 0.66 | 0.972636 |
Target: 5'- aACGCGGUCgcgucgGACGU-CGGgaGCGUCGa -3' miRNA: 3'- -UGUGCUAGaa----CUGCGcGUCg-CGCAGC- -5' |
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9265 | 3' | -55.1 | NC_002512.2 | + | 114330 | 0.7 | 0.862103 |
Target: 5'- -aGCGuUCUUGACGCGCgcGGCGgG-CGa -3' miRNA: 3'- ugUGCuAGAACUGCGCG--UCGCgCaGC- -5' |
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9265 | 3' | -55.1 | NC_002512.2 | + | 112876 | 0.71 | 0.822706 |
Target: 5'- -gAUGAUCUUGcgcccgcccuGCGUGCGGC-CGUCGg -3' miRNA: 3'- ugUGCUAGAAC----------UGCGCGUCGcGCAGC- -5' |
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9265 | 3' | -55.1 | NC_002512.2 | + | 112333 | 0.66 | 0.966909 |
Target: 5'- gACGC---CUUGGCGCuguacaGCAGCGUGUCc -3' miRNA: 3'- -UGUGcuaGAACUGCG------CGUCGCGCAGc -5' |
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9265 | 3' | -55.1 | NC_002512.2 | + | 105458 | 0.76 | 0.564671 |
Target: 5'- gACAUGAUCUUGAcCGCGUacauGGCGaCGUCc -3' miRNA: 3'- -UGUGCUAGAACU-GCGCG----UCGC-GCAGc -5' |
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9265 | 3' | -55.1 | NC_002512.2 | + | 105047 | 0.67 | 0.944784 |
Target: 5'- uCGCGGgccucgCUcGGCGacgGCGGCGUGUCGg -3' miRNA: 3'- uGUGCUa-----GAaCUGCg--CGUCGCGCAGC- -5' |
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9265 | 3' | -55.1 | NC_002512.2 | + | 104791 | 0.7 | 0.876524 |
Target: 5'- gGCGgGGUCc--GCGCGCGGCGgGUUGu -3' miRNA: 3'- -UGUgCUAGaacUGCGCGUCGCgCAGC- -5' |
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9265 | 3' | -55.1 | NC_002512.2 | + | 103495 | 0.67 | 0.949012 |
Target: 5'- cCGCGGaccgCUcGcCGgGCAGCGCGUUGg -3' miRNA: 3'- uGUGCUa---GAaCuGCgCGUCGCGCAGC- -5' |
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9265 | 3' | -55.1 | NC_002512.2 | + | 103091 | 0.69 | 0.902845 |
Target: 5'- -gGCGAUCccgggGACggGCGCGGCacGCGUCGc -3' miRNA: 3'- ugUGCUAGaa---CUG--CGCGUCG--CGCAGC- -5' |
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9265 | 3' | -55.1 | NC_002512.2 | + | 101596 | 0.69 | 0.89659 |
Target: 5'- cCGCGGUCgu-GCGgGCGGC-CGUCGg -3' miRNA: 3'- uGUGCUAGaacUGCgCGUCGcGCAGC- -5' |
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9265 | 3' | -55.1 | NC_002512.2 | + | 101119 | 0.78 | 0.43383 |
Target: 5'- gGCGCGG-CgUGcgcuCGCGCAGCGCGUCGu -3' miRNA: 3'- -UGUGCUaGaACu---GCGCGUCGCGCAGC- -5' |
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9265 | 3' | -55.1 | NC_002512.2 | + | 99882 | 0.67 | 0.956807 |
Target: 5'- uGCugGAcCgggagGAgGCGCGGCcCGUCGa -3' miRNA: 3'- -UGugCUaGaa---CUgCGCGUCGcGCAGC- -5' |
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9265 | 3' | -55.1 | NC_002512.2 | + | 98168 | 0.7 | 0.839008 |
Target: 5'- cCGCGGUCUgGACggGCGCGGCGacCGUCc -3' miRNA: 3'- uGUGCUAGAaCUG--CGCGUCGC--GCAGc -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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