miRNA display CGI


Results 21 - 40 of 328 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9265 5' -63.6 NC_002512.2 + 205023 0.75 0.255078
Target:  5'- cGCCUCGguCGGGGCcgcguccgcCGCCGACCggccgCGGg -3'
miRNA:   3'- cCGGAGC--GCCCCGu--------GCGGCUGGa----GCC- -5'
9265 5' -63.6 NC_002512.2 + 227367 0.75 0.255078
Target:  5'- aGGCC---CGGGGC-CGCCGGCgUCGGg -3'
miRNA:   3'- -CCGGagcGCCCCGuGCGGCUGgAGCC- -5'
9265 5' -63.6 NC_002512.2 + 43064 0.75 0.257307
Target:  5'- gGGCCUCGCcgaggcaccggucccGGGGCGCGgCGAgCagCGGg -3'
miRNA:   3'- -CCGGAGCG---------------CCCCGUGCgGCUgGa-GCC- -5'
9265 5' -63.6 NC_002512.2 + 89612 0.75 0.266382
Target:  5'- cGUC-CGCGGGGCgcucggGCGCCGAagaCUCGGc -3'
miRNA:   3'- cCGGaGCGCCCCG------UGCGGCUg--GAGCC- -5'
9265 5' -63.6 NC_002512.2 + 189644 0.75 0.266382
Target:  5'- cGGCUUCGuCGGGaCGCGCCGACaC-CGGc -3'
miRNA:   3'- -CCGGAGC-GCCCcGUGCGGCUG-GaGCC- -5'
9265 5' -63.6 NC_002512.2 + 195832 0.75 0.272184
Target:  5'- cGCCgUCGUGGGGCACGCCucgagcaaccGGCgCUCGcGg -3'
miRNA:   3'- cCGG-AGCGCCCCGUGCGG----------CUG-GAGC-C- -5'
9265 5' -63.6 NC_002512.2 + 171860 0.75 0.278088
Target:  5'- cGGCCggGagGGGGCggaACGCCGuCCUCGGc -3'
miRNA:   3'- -CCGGagCg-CCCCG---UGCGGCuGGAGCC- -5'
9265 5' -63.6 NC_002512.2 + 221670 0.75 0.278088
Target:  5'- aGGCCUacgucugggaCGCGGacacccgcccGGCgACGCuCGGCCUCGGg -3'
miRNA:   3'- -CCGGA----------GCGCC----------CCG-UGCG-GCUGGAGCC- -5'
9265 5' -63.6 NC_002512.2 + 94547 0.74 0.293913
Target:  5'- cGGCCagcagcaccccggCGCGGcugACGCCGACCUCGGg -3'
miRNA:   3'- -CCGGa------------GCGCCccgUGCGGCUGGAGCC- -5'
9265 5' -63.6 NC_002512.2 + 80640 0.74 0.29641
Target:  5'- cGGCCgucCGCGGcGGCgGCGCCGGguCCgUCGGu -3'
miRNA:   3'- -CCGGa--GCGCC-CCG-UGCGGCU--GG-AGCC- -5'
9265 5' -63.6 NC_002512.2 + 162145 0.74 0.302722
Target:  5'- cGG-CUCGCGaggccGGCACGCCGACCgcgaaagCGGc -3'
miRNA:   3'- -CCgGAGCGCc----CCGUGCGGCUGGa------GCC- -5'
9265 5' -63.6 NC_002512.2 + 128294 0.74 0.302722
Target:  5'- cGGCCgcccgcacgacCGCGGGGacccUACGCuCGACCUCGa -3'
miRNA:   3'- -CCGGa----------GCGCCCC----GUGCG-GCUGGAGCc -5'
9265 5' -63.6 NC_002512.2 + 222929 0.73 0.329002
Target:  5'- cGGCC-CGCGGGccaacgacCugGCCGGCCUCu- -3'
miRNA:   3'- -CCGGaGCGCCCc-------GugCGGCUGGAGcc -5'
9265 5' -63.6 NC_002512.2 + 2292 0.73 0.329002
Target:  5'- cGGCCgcugcgggUgGCGGGGCucugcuGCGCCGgcgguccggagGCCUCGGu -3'
miRNA:   3'- -CCGG--------AgCGCCCCG------UGCGGC-----------UGGAGCC- -5'
9265 5' -63.6 NC_002512.2 + 214629 0.73 0.329002
Target:  5'- -cCCUCGCGGGGaCGCggGCCG-CCUCGc -3'
miRNA:   3'- ccGGAGCGCCCC-GUG--CGGCuGGAGCc -5'
9265 5' -63.6 NC_002512.2 + 113141 0.73 0.33583
Target:  5'- -aCCgcgCGCGGGGC--GCCGGCCUCGc -3'
miRNA:   3'- ccGGa--GCGCCCCGugCGGCUGGAGCc -5'
9265 5' -63.6 NC_002512.2 + 221168 0.73 0.33583
Target:  5'- gGGCg-CGCGcGGC-CGaCCGACCUCGGa -3'
miRNA:   3'- -CCGgaGCGCcCCGuGC-GGCUGGAGCC- -5'
9265 5' -63.6 NC_002512.2 + 20229 0.73 0.349794
Target:  5'- cGGCaucaUCGacaGGGGCACGCCGcaGCCgUCGu -3'
miRNA:   3'- -CCGg---AGCg--CCCCGUGCGGC--UGG-AGCc -5'
9265 5' -63.6 NC_002512.2 + 156511 0.73 0.349794
Target:  5'- cGGCCUgggcgGCGGGGCGCGgggguCCGGCggCGGg -3'
miRNA:   3'- -CCGGAg----CGCCCCGUGC-----GGCUGgaGCC- -5'
9265 5' -63.6 NC_002512.2 + 111289 0.73 0.356929
Target:  5'- cGGCCgcCGCGGGGagagggcCGCCGAUCgCGGc -3'
miRNA:   3'- -CCGGa-GCGCCCCgu-----GCGGCUGGaGCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.