miRNA display CGI


Results 1 - 20 of 104 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9278 5' -54.8 NC_002512.2 + 5177 0.66 0.976208
Target:  5'- gGGCGGCGGCcggccccagcagggCgGGCaggACCGcgGGCCa -3'
miRNA:   3'- -UCGCUGUCGaa------------GaCCGa--UGGCa-UCGG- -5'
9278 5' -54.8 NC_002512.2 + 122065 0.66 0.975962
Target:  5'- cGGUGAgcaGGCUgaagUGGCUGCCGcacgcGCCg -3'
miRNA:   3'- -UCGCUg--UCGAag--ACCGAUGGCau---CGG- -5'
9278 5' -54.8 NC_002512.2 + 219578 0.66 0.975962
Target:  5'- uGCGACGGCUccuacgucCUGGUgGCCGacucgcuGCCc -3'
miRNA:   3'- uCGCUGUCGAa-------GACCGaUGGCau-----CGG- -5'
9278 5' -54.8 NC_002512.2 + 158915 0.66 0.975715
Target:  5'- cGCGGCcgaguacGGCUUCggcgggGGC-GCCGgcGGCCu -3'
miRNA:   3'- uCGCUG-------UCGAAGa-----CCGaUGGCa-UCGG- -5'
9278 5' -54.8 NC_002512.2 + 103351 0.66 0.973408
Target:  5'- gGGCgGACGGCacggUCgaggucaGGCcGCCGgAGCCg -3'
miRNA:   3'- -UCG-CUGUCGa---AGa------CCGaUGGCaUCGG- -5'
9278 5' -54.8 NC_002512.2 + 4582 0.66 0.973408
Target:  5'- gGGCGGCGGagga-GGCggcGCCGcgGGCCg -3'
miRNA:   3'- -UCGCUGUCgaagaCCGa--UGGCa-UCGG- -5'
9278 5' -54.8 NC_002512.2 + 62988 0.66 0.970663
Target:  5'- cGCGGacCAGCUUCc-GCUGCUugAGCCa -3'
miRNA:   3'- uCGCU--GUCGAAGacCGAUGGcaUCGG- -5'
9278 5' -54.8 NC_002512.2 + 59832 0.66 0.970663
Target:  5'- aGGCGGCcGCggCggcGGCgGCCaUGGCCa -3'
miRNA:   3'- -UCGCUGuCGaaGa--CCGaUGGcAUCGG- -5'
9278 5' -54.8 NC_002512.2 + 39761 0.66 0.970663
Target:  5'- aGGCGAgCAGCacgcaGCUGCCGUGgaagcGCCg -3'
miRNA:   3'- -UCGCU-GUCGaagacCGAUGGCAU-----CGG- -5'
9278 5' -54.8 NC_002512.2 + 20411 0.66 0.970663
Target:  5'- cGGCGACgAGCagCcGGUguucGCCGgAGCCg -3'
miRNA:   3'- -UCGCUG-UCGaaGaCCGa---UGGCaUCGG- -5'
9278 5' -54.8 NC_002512.2 + 98584 0.66 0.970663
Target:  5'- gGGCGGCGGgUcgUCcGcGCUGCaCGUccAGCCg -3'
miRNA:   3'- -UCGCUGUCgA--AGaC-CGAUG-GCA--UCGG- -5'
9278 5' -54.8 NC_002512.2 + 1324 0.66 0.970663
Target:  5'- cGCGGuaaggaAGCgUCcGGCUGCCGUccGCCu -3'
miRNA:   3'- uCGCUg-----UCGaAGaCCGAUGGCAu-CGG- -5'
9278 5' -54.8 NC_002512.2 + 164809 0.66 0.970663
Target:  5'- cGCGACGGga-CUGGagaGCCG-AGCCg -3'
miRNA:   3'- uCGCUGUCgaaGACCga-UGGCaUCGG- -5'
9278 5' -54.8 NC_002512.2 + 100455 0.66 0.970663
Target:  5'- gGGCGACGGCgaagagcgcgUUCUcGGU---CGUGGCCc -3'
miRNA:   3'- -UCGCUGUCG----------AAGA-CCGaugGCAUCGG- -5'
9278 5' -54.8 NC_002512.2 + 116663 0.66 0.970663
Target:  5'- -aCGuACAGCUcgUGGCggACCGcgAGCCg -3'
miRNA:   3'- ucGC-UGUCGAagACCGa-UGGCa-UCGG- -5'
9278 5' -54.8 NC_002512.2 + 227818 0.66 0.970378
Target:  5'- cGGCGugGacuccgcGCUcccgCUGGC-GCCGcAGCCg -3'
miRNA:   3'- -UCGCugU-------CGAa---GACCGaUGGCaUCGG- -5'
9278 5' -54.8 NC_002512.2 + 57605 0.66 0.967721
Target:  5'- cGCGACGGCagaugUCccgGGCgACCG-AGCg -3'
miRNA:   3'- uCGCUGUCGa----AGa--CCGaUGGCaUCGg -5'
9278 5' -54.8 NC_002512.2 + 3076 0.66 0.967721
Target:  5'- cGGCGGCGGCggCcacGGCggcgGCCG-AGaCCa -3'
miRNA:   3'- -UCGCUGUCGaaGa--CCGa---UGGCaUC-GG- -5'
9278 5' -54.8 NC_002512.2 + 220339 0.66 0.967721
Target:  5'- gGGCcgGACGGCcUCgucaacGCcgugGCCGUGGCCg -3'
miRNA:   3'- -UCG--CUGUCGaAGac----CGa---UGGCAUCGG- -5'
9278 5' -54.8 NC_002512.2 + 108488 0.66 0.967721
Target:  5'- cGUGACGGUcgUCaagGGCgagGCCG-GGCCc -3'
miRNA:   3'- uCGCUGUCGa-AGa--CCGa--UGGCaUCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.