miRNA display CGI


Results 1 - 20 of 104 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9278 5' -54.8 NC_002512.2 + 190 0.72 0.769078
Target:  5'- gGGCGugGGCUgccCUGGCcccCCGUcgcGCCg -3'
miRNA:   3'- -UCGCugUCGAa--GACCGau-GGCAu--CGG- -5'
9278 5' -54.8 NC_002512.2 + 1324 0.66 0.970663
Target:  5'- cGCGGuaaggaAGCgUCcGGCUGCCGUccGCCu -3'
miRNA:   3'- uCGCUg-----UCGaAGaCCGAUGGCAu-CGG- -5'
9278 5' -54.8 NC_002512.2 + 2037 0.68 0.920998
Target:  5'- gAGCGACAGCagggugaUC-GGCUG-CGgcGCCa -3'
miRNA:   3'- -UCGCUGUCGa------AGaCCGAUgGCauCGG- -5'
9278 5' -54.8 NC_002512.2 + 2928 0.67 0.949858
Target:  5'- --gGACAGCUUCuUGGCcucCCGcgcGGCCu -3'
miRNA:   3'- ucgCUGUCGAAG-ACCGau-GGCa--UCGG- -5'
9278 5' -54.8 NC_002512.2 + 3076 0.66 0.967721
Target:  5'- cGGCGGCGGCggCcacGGCggcgGCCG-AGaCCa -3'
miRNA:   3'- -UCGCUGUCGaaGa--CCGa---UGGCaUC-GG- -5'
9278 5' -54.8 NC_002512.2 + 4420 0.67 0.945624
Target:  5'- cGaCGGCGGCUgCUGGUagACCGgcgggguGCCg -3'
miRNA:   3'- uC-GCUGUCGAaGACCGa-UGGCau-----CGG- -5'
9278 5' -54.8 NC_002512.2 + 4582 0.66 0.973408
Target:  5'- gGGCGGCGGagga-GGCggcGCCGcgGGCCg -3'
miRNA:   3'- -UCGCUGUCgaagaCCGa--UGGCa-UCGG- -5'
9278 5' -54.8 NC_002512.2 + 4745 0.77 0.502583
Target:  5'- uGCGACGGCUgcUgUGGCaGCUGUGGCa -3'
miRNA:   3'- uCGCUGUCGA--AgACCGaUGGCAUCGg -5'
9278 5' -54.8 NC_002512.2 + 5009 0.7 0.854679
Target:  5'- aGGCGGcCGGCga--GGCgggaaaccagGCCGUGGCCa -3'
miRNA:   3'- -UCGCU-GUCGaagaCCGa---------UGGCAUCGG- -5'
9278 5' -54.8 NC_002512.2 + 5177 0.66 0.976208
Target:  5'- gGGCGGCGGCcggccccagcagggCgGGCaggACCGcgGGCCa -3'
miRNA:   3'- -UCGCUGUCGaa------------GaCCGa--UGGCa-UCGG- -5'
9278 5' -54.8 NC_002512.2 + 6410 0.67 0.945624
Target:  5'- aGGCGGCGGCggcgCUGGggaaggcgGCCGUcuGGCg -3'
miRNA:   3'- -UCGCUGUCGaa--GACCga------UGGCA--UCGg -5'
9278 5' -54.8 NC_002512.2 + 7053 0.68 0.936469
Target:  5'- aAGCGGCAGUUccgUCggaagucGCaGCCGUGGCUc -3'
miRNA:   3'- -UCGCUGUCGA---AGac-----CGaUGGCAUCGG- -5'
9278 5' -54.8 NC_002512.2 + 7328 0.72 0.731047
Target:  5'- cGCGGCGGgacggUCgGGUcGCCGUAGCCc -3'
miRNA:   3'- uCGCUGUCga---AGaCCGaUGGCAUCGG- -5'
9278 5' -54.8 NC_002512.2 + 7463 0.66 0.964575
Target:  5'- aAGCcGCGGCgc--GGCUGCCGgcccccGCCg -3'
miRNA:   3'- -UCGcUGUCGaagaCCGAUGGCau----CGG- -5'
9278 5' -54.8 NC_002512.2 + 7619 0.68 0.915376
Target:  5'- cGCGGC-GCgUUUGGUcACCGUggaGGCCa -3'
miRNA:   3'- uCGCUGuCGaAGACCGaUGGCA---UCGG- -5'
9278 5' -54.8 NC_002512.2 + 12860 0.67 0.949858
Target:  5'- cGUGAC-GCUggaCaGGCUGCUGaAGCCg -3'
miRNA:   3'- uCGCUGuCGAa--GaCCGAUGGCaUCGG- -5'
9278 5' -54.8 NC_002512.2 + 13458 0.72 0.731047
Target:  5'- gGGCGGCGGCgagcCUGGCguccccggaccUGCUGcGGCCg -3'
miRNA:   3'- -UCGCUGUCGaa--GACCG-----------AUGGCaUCGG- -5'
9278 5' -54.8 NC_002512.2 + 15627 0.68 0.926388
Target:  5'- aGGCGACAGCggaacuccUCggccgcgGGCggcgaGCCGacgAGCCg -3'
miRNA:   3'- -UCGCUGUCGa-------AGa------CCGa----UGGCa--UCGG- -5'
9278 5' -54.8 NC_002512.2 + 20411 0.66 0.970663
Target:  5'- cGGCGACgAGCagCcGGUguucGCCGgAGCCg -3'
miRNA:   3'- -UCGCUG-UCGaaGaCCGa---UGGCaUCGG- -5'
9278 5' -54.8 NC_002512.2 + 23306 0.68 0.936469
Target:  5'- cGCGuACGGCaccugcaagUUCUGGCgccCCG-GGCCg -3'
miRNA:   3'- uCGC-UGUCG---------AAGACCGau-GGCaUCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.