miRNA display CGI


Results 1 - 20 of 104 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9278 5' -54.8 NC_002512.2 + 57443 0.69 0.876859
Target:  5'- gGGCGuCGauCUUCUGGCgACUGUAGCg -3'
miRNA:   3'- -UCGCuGUc-GAAGACCGaUGGCAUCGg -5'
9278 5' -54.8 NC_002512.2 + 73735 1.13 0.00312
Target:  5'- cAGCGACAGCUUCUGGCUACCGUAGCCg -3'
miRNA:   3'- -UCGCUGUCGAAGACCGAUGGCAUCGG- -5'
9278 5' -54.8 NC_002512.2 + 112443 0.79 0.37034
Target:  5'- cGGCGACAGCUUCUGGUgcAUCacGGCCa -3'
miRNA:   3'- -UCGCUGUCGAAGACCGa-UGGcaUCGG- -5'
9278 5' -54.8 NC_002512.2 + 68905 0.72 0.778311
Target:  5'- gGGCGGuCGuGCUgCUGGCcGCCGcGGCCu -3'
miRNA:   3'- -UCGCU-GU-CGAaGACCGaUGGCaUCGG- -5'
9278 5' -54.8 NC_002512.2 + 83557 0.71 0.796385
Target:  5'- gAGCGGCAuGCggacgGaGCgGCCGUGGCCg -3'
miRNA:   3'- -UCGCUGU-CGaaga-C-CGaUGGCAUCGG- -5'
9278 5' -54.8 NC_002512.2 + 4745 0.77 0.502583
Target:  5'- uGCGACGGCUgcUgUGGCaGCUGUGGCa -3'
miRNA:   3'- uCGCUGUCGA--AgACCGaUGGCAUCGg -5'
9278 5' -54.8 NC_002512.2 + 13458 0.72 0.731047
Target:  5'- gGGCGGCGGCgagcCUGGCguccccggaccUGCUGcGGCCg -3'
miRNA:   3'- -UCGCUGUCGaa--GACCG-----------AUGGCaUCGG- -5'
9278 5' -54.8 NC_002512.2 + 229593 0.72 0.769078
Target:  5'- gGGCGugGGCUgccCUGGCcccCCGUcgcGCCg -3'
miRNA:   3'- -UCGCugUCGAa--GACCGau-GGCAu--CGG- -5'
9278 5' -54.8 NC_002512.2 + 5009 0.7 0.854679
Target:  5'- aGGCGGcCGGCga--GGCgggaaaccagGCCGUGGCCa -3'
miRNA:   3'- -UCGCU-GUCGaagaCCGa---------UGGCAUCGG- -5'
9278 5' -54.8 NC_002512.2 + 81033 0.68 0.920998
Target:  5'- aGGCGGCAGCcggcgUUCcGGCaGCgGUGcGCCc -3'
miRNA:   3'- -UCGCUGUCG-----AAGaCCGaUGgCAU-CGG- -5'
9278 5' -54.8 NC_002512.2 + 5177 0.66 0.976208
Target:  5'- gGGCGGCGGCcggccccagcagggCgGGCaggACCGcgGGCCa -3'
miRNA:   3'- -UCGCUGUCGaa------------GaCCGa--UGGCa-UCGG- -5'
9278 5' -54.8 NC_002512.2 + 125441 0.72 0.731047
Target:  5'- uGCGAgAcguGCUUCUGGUgcgccaCGUAGCCg -3'
miRNA:   3'- uCGCUgU---CGAAGACCGaug---GCAUCGG- -5'
9278 5' -54.8 NC_002512.2 + 69082 0.74 0.641447
Target:  5'- cGgGGCGGCUgguaCU-GCUGCCGUGGCUg -3'
miRNA:   3'- uCgCUGUCGAa---GAcCGAUGGCAUCGG- -5'
9278 5' -54.8 NC_002512.2 + 34855 0.7 0.830735
Target:  5'- cGCGGCGGCUUCUucGUcGCCGUcgucGCCg -3'
miRNA:   3'- uCGCUGUCGAAGAc-CGaUGGCAu---CGG- -5'
9278 5' -54.8 NC_002512.2 + 124172 0.7 0.854679
Target:  5'- gAGCGGgAGUgcacCUGGCUGCuCGUccGCCg -3'
miRNA:   3'- -UCGCUgUCGaa--GACCGAUG-GCAu-CGG- -5'
9278 5' -54.8 NC_002512.2 + 7328 0.72 0.731047
Target:  5'- cGCGGCGGgacggUCgGGUcGCCGUAGCCc -3'
miRNA:   3'- uCGCUGUCga---AGaCCGaUGGCAUCGG- -5'
9278 5' -54.8 NC_002512.2 + 2037 0.68 0.920998
Target:  5'- gAGCGACAGCagggugaUC-GGCUG-CGgcGCCa -3'
miRNA:   3'- -UCGCUGUCGa------AGaCCGAUgGCauCGG- -5'
9278 5' -54.8 NC_002512.2 + 105061 0.68 0.921548
Target:  5'- cGGCGACGGCggcgugucgggguagUCUcccGGCU-CCGUcAGCUg -3'
miRNA:   3'- -UCGCUGUCGa--------------AGA---CCGAuGGCA-UCGG- -5'
9278 5' -54.8 NC_002512.2 + 190 0.72 0.769078
Target:  5'- gGGCGugGGCUgccCUGGCcccCCGUcgcGCCg -3'
miRNA:   3'- -UCGCugUCGAa--GACCGau-GGCAu--CGG- -5'
9278 5' -54.8 NC_002512.2 + 107538 0.71 0.803456
Target:  5'- cGGgGGCAGCUUCUGGaggacguuguCCGUcccccgccucagGGCCa -3'
miRNA:   3'- -UCgCUGUCGAAGACCgau-------GGCA------------UCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.