miRNA display CGI


Results 1 - 20 of 104 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9278 5' -54.8 NC_002512.2 + 219578 0.66 0.975962
Target:  5'- uGCGACGGCUccuacgucCUGGUgGCCGacucgcuGCCc -3'
miRNA:   3'- uCGCUGUCGAa-------GACCGaUGGCau-----CGG- -5'
9278 5' -54.8 NC_002512.2 + 100623 0.67 0.949858
Target:  5'- -aCGACAGCUUCUGGagcgGCaggGGCUu -3'
miRNA:   3'- ucGCUGUCGAAGACCga--UGgcaUCGG- -5'
9278 5' -54.8 NC_002512.2 + 180196 0.67 0.953866
Target:  5'- aGGCGaaGCAGUUcgacaugcaCUGGCUGCCGgcccgcGCCc -3'
miRNA:   3'- -UCGC--UGUCGAa--------GACCGAUGGCau----CGG- -5'
9278 5' -54.8 NC_002512.2 + 180563 0.67 0.953866
Target:  5'- uGCGGCgGGCUcCggUGGCUcucuaucaggGCCGUGGCg -3'
miRNA:   3'- uCGCUG-UCGAaG--ACCGA----------UGGCAUCGg -5'
9278 5' -54.8 NC_002512.2 + 94648 0.67 0.953866
Target:  5'- cGGaCGACGGCcUCgaGGCggcCCGgGGCCg -3'
miRNA:   3'- -UC-GCUGUCGaAGa-CCGau-GGCaUCGG- -5'
9278 5' -54.8 NC_002512.2 + 224980 0.67 0.957653
Target:  5'- gGGCGGCGGCggC-GGCgcccucuucCCGUcGCCg -3'
miRNA:   3'- -UCGCUGUCGaaGaCCGau-------GGCAuCGG- -5'
9278 5' -54.8 NC_002512.2 + 220284 0.66 0.961221
Target:  5'- cGuCGGCAGCUUCcuGCccGCCG-AGCCg -3'
miRNA:   3'- uC-GCUGUCGAAGacCGa-UGGCaUCGG- -5'
9278 5' -54.8 NC_002512.2 + 204714 0.66 0.961221
Target:  5'- cGGCGACGGCg---GGCccggGgCGgggGGCCg -3'
miRNA:   3'- -UCGCUGUCGaagaCCGa---UgGCa--UCGG- -5'
9278 5' -54.8 NC_002512.2 + 214353 0.66 0.961221
Target:  5'- cAGCGAgAGCcagagcgccUUCUGGCU-CCG-GGaCCa -3'
miRNA:   3'- -UCGCUgUCG---------AAGACCGAuGGCaUC-GG- -5'
9278 5' -54.8 NC_002512.2 + 170381 0.66 0.964575
Target:  5'- cGCGGCGccgcGCUgcacuUCUGGCacagcagGCUGUAGUCc -3'
miRNA:   3'- uCGCUGU----CGA-----AGACCGa------UGGCAUCGG- -5'
9278 5' -54.8 NC_002512.2 + 176180 0.66 0.967721
Target:  5'- uGGcCGACAGCUUCUccaGCUccucGgCGUAcGCCa -3'
miRNA:   3'- -UC-GCUGUCGAAGAc--CGA----UgGCAU-CGG- -5'
9278 5' -54.8 NC_002512.2 + 108488 0.66 0.967721
Target:  5'- cGUGACGGUcgUCaagGGCgagGCCG-GGCCc -3'
miRNA:   3'- uCGCUGUCGa-AGa--CCGa--UGGCaUCGG- -5'
9278 5' -54.8 NC_002512.2 + 220339 0.66 0.967721
Target:  5'- gGGCcgGACGGCcUCgucaacGCcgugGCCGUGGCCg -3'
miRNA:   3'- -UCG--CUGUCGaAGac----CGa---UGGCAUCGG- -5'
9278 5' -54.8 NC_002512.2 + 227818 0.66 0.970378
Target:  5'- cGGCGugGacuccgcGCUcccgCUGGC-GCCGcAGCCg -3'
miRNA:   3'- -UCGCugU-------CGAa---GACCGaUGGCaUCGG- -5'
9278 5' -54.8 NC_002512.2 + 116663 0.66 0.970663
Target:  5'- -aCGuACAGCUcgUGGCggACCGcgAGCCg -3'
miRNA:   3'- ucGC-UGUCGAagACCGa-UGGCa-UCGG- -5'
9278 5' -54.8 NC_002512.2 + 100455 0.66 0.970663
Target:  5'- gGGCGACGGCgaagagcgcgUUCUcGGU---CGUGGCCc -3'
miRNA:   3'- -UCGCUGUCG----------AAGA-CCGaugGCAUCGG- -5'
9278 5' -54.8 NC_002512.2 + 164809 0.66 0.970663
Target:  5'- cGCGACGGga-CUGGagaGCCG-AGCCg -3'
miRNA:   3'- uCGCUGUCgaaGACCga-UGGCaUCGG- -5'
9278 5' -54.8 NC_002512.2 + 103351 0.66 0.973408
Target:  5'- gGGCgGACGGCacggUCgaggucaGGCcGCCGgAGCCg -3'
miRNA:   3'- -UCG-CUGUCGa---AGa------CCGaUGGCaUCGG- -5'
9278 5' -54.8 NC_002512.2 + 158915 0.66 0.975715
Target:  5'- cGCGGCcgaguacGGCUUCggcgggGGC-GCCGgcGGCCu -3'
miRNA:   3'- uCGCUG-------UCGAAGa-----CCGaUGGCa-UCGG- -5'
9278 5' -54.8 NC_002512.2 + 122065 0.66 0.975962
Target:  5'- cGGUGAgcaGGCUgaagUGGCUGCCGcacgcGCCg -3'
miRNA:   3'- -UCGCUg--UCGAag--ACCGAUGGCau---CGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.