miRNA display CGI


Results 21 - 40 of 104 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9278 5' -54.8 NC_002512.2 + 73735 1.13 0.00312
Target:  5'- cAGCGACAGCUUCUGGCUACCGUAGCCg -3'
miRNA:   3'- -UCGCUGUCGAAGACCGAUGGCAUCGG- -5'
9278 5' -54.8 NC_002512.2 + 4420 0.67 0.945624
Target:  5'- cGaCGGCGGCUgCUGGUagACCGgcgggguGCCg -3'
miRNA:   3'- uC-GCUGUCGAaGACCGa-UGGCau-----CGG- -5'
9278 5' -54.8 NC_002512.2 + 123151 0.67 0.941162
Target:  5'- gGGCGGCGGCgccgCgaucGCcGCCGaGGCCg -3'
miRNA:   3'- -UCGCUGUCGaa--Gac--CGaUGGCaUCGG- -5'
9278 5' -54.8 NC_002512.2 + 96278 0.68 0.926388
Target:  5'- -cCGGCAgGCgggggGGCUGCCGcgGGCCg -3'
miRNA:   3'- ucGCUGU-CGaaga-CCGAUGGCa-UCGG- -5'
9278 5' -54.8 NC_002512.2 + 34855 0.7 0.830735
Target:  5'- cGCGGCGGCUUCUucGUcGCCGUcgucGCCg -3'
miRNA:   3'- uCGCUGUCGAAGAc-CGaUGGCAu---CGG- -5'
9278 5' -54.8 NC_002512.2 + 74558 0.67 0.949858
Target:  5'- cGGCGACgggAGCgaggUUGGCgagAUCGUccucGGCCa -3'
miRNA:   3'- -UCGCUG---UCGaa--GACCGa--UGGCA----UCGG- -5'
9278 5' -54.8 NC_002512.2 + 104929 0.67 0.945624
Target:  5'- cGCGACGGCcuccucgUCcGGCgucgGCgCGgcGCCg -3'
miRNA:   3'- uCGCUGUCGa------AGaCCGa---UG-GCauCGG- -5'
9278 5' -54.8 NC_002512.2 + 229593 0.72 0.769078
Target:  5'- gGGCGugGGCUgccCUGGCcccCCGUcgcGCCg -3'
miRNA:   3'- -UCGCugUCGAa--GACCGau-GGCAu--CGG- -5'
9278 5' -54.8 NC_002512.2 + 7053 0.68 0.936469
Target:  5'- aAGCGGCAGUUccgUCggaagucGCaGCCGUGGCUc -3'
miRNA:   3'- -UCGCUGUCGA---AGac-----CGaUGGCAUCGG- -5'
9278 5' -54.8 NC_002512.2 + 15627 0.68 0.926388
Target:  5'- aGGCGACAGCggaacuccUCggccgcgGGCggcgaGCCGacgAGCCg -3'
miRNA:   3'- -UCGCUGUCGa-------AGa------CCGa----UGGCa--UCGG- -5'
9278 5' -54.8 NC_002512.2 + 13458 0.72 0.731047
Target:  5'- gGGCGGCGGCgagcCUGGCguccccggaccUGCUGcGGCCg -3'
miRNA:   3'- -UCGCUGUCGaa--GACCG-----------AUGGCaUCGG- -5'
9278 5' -54.8 NC_002512.2 + 7328 0.72 0.731047
Target:  5'- cGCGGCGGgacggUCgGGUcGCCGUAGCCc -3'
miRNA:   3'- uCGCUGUCga---AGaCCGaUGGCAUCGG- -5'
9278 5' -54.8 NC_002512.2 + 91915 0.67 0.953866
Target:  5'- gGGCGGCGGCgcgccgUC-GGCgGCCGacuUGGUCu -3'
miRNA:   3'- -UCGCUGUCGa-----AGaCCGaUGGC---AUCGG- -5'
9278 5' -54.8 NC_002512.2 + 99937 0.67 0.949858
Target:  5'- cGGCGuCGGCUgCU-GCUGCCGccgguGCCu -3'
miRNA:   3'- -UCGCuGUCGAaGAcCGAUGGCau---CGG- -5'
9278 5' -54.8 NC_002512.2 + 38913 0.67 0.941162
Target:  5'- cGGCGACGGCccggaggGGCcGCCGcGGCg -3'
miRNA:   3'- -UCGCUGUCGaaga---CCGaUGGCaUCGg -5'
9278 5' -54.8 NC_002512.2 + 57443 0.69 0.876859
Target:  5'- gGGCGuCGauCUUCUGGCgACUGUAGCg -3'
miRNA:   3'- -UCGCuGUc-GAAGACCGaUGGCAUCGg -5'
9278 5' -54.8 NC_002512.2 + 124172 0.7 0.854679
Target:  5'- gAGCGGgAGUgcacCUGGCUGCuCGUccGCCg -3'
miRNA:   3'- -UCGCUgUCGaa--GACCGAUG-GCAu-CGG- -5'
9278 5' -54.8 NC_002512.2 + 125441 0.72 0.731047
Target:  5'- uGCGAgAcguGCUUCUGGUgcgccaCGUAGCCg -3'
miRNA:   3'- uCGCUgU---CGAAGACCGaug---GCAUCGG- -5'
9278 5' -54.8 NC_002512.2 + 104297 0.68 0.926388
Target:  5'- -cCGGCGGCgggaGGCUGCCGUgaAGUCu -3'
miRNA:   3'- ucGCUGUCGaagaCCGAUGGCA--UCGG- -5'
9278 5' -54.8 NC_002512.2 + 23306 0.68 0.936469
Target:  5'- cGCGuACGGCaccugcaagUUCUGGCgccCCG-GGCCg -3'
miRNA:   3'- uCGC-UGUCG---------AAGACCGau-GGCaUCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.