Results 41 - 60 of 104 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. |
strand![]() |
Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
9278 | 5' | -54.8 | NC_002512.2 | + | 27754 | 0.67 | 0.953866 |
Target: 5'- cGCGGCGGC----GGCcgagACCGgcGCCa -3' miRNA: 3'- uCGCUGUCGaagaCCGa---UGGCauCGG- -5' |
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9278 | 5' | -54.8 | NC_002512.2 | + | 154592 | 0.67 | 0.957653 |
Target: 5'- gGGCGACGGCggcaUCgucGCcGCCGccGCCg -3' miRNA: 3'- -UCGCUGUCGa---AGac-CGaUGGCauCGG- -5' |
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9278 | 5' | -54.8 | NC_002512.2 | + | 58985 | 0.66 | 0.964575 |
Target: 5'- aAGCG-CAGCgugUCcaGGCgGCCGUcggcgaggAGCCg -3' miRNA: 3'- -UCGCuGUCGa--AGa-CCGaUGGCA--------UCGG- -5' |
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9278 | 5' | -54.8 | NC_002512.2 | + | 135332 | 0.66 | 0.964575 |
Target: 5'- cGGCGuCAGCcgCgccgGGgUGCUGcUGGCCg -3' miRNA: 3'- -UCGCuGUCGaaGa---CCgAUGGC-AUCGG- -5' |
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9278 | 5' | -54.8 | NC_002512.2 | + | 7463 | 0.66 | 0.964575 |
Target: 5'- aAGCcGCGGCgc--GGCUGCCGgcccccGCCg -3' miRNA: 3'- -UCGcUGUCGaagaCCGAUGGCau----CGG- -5' |
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9278 | 5' | -54.8 | NC_002512.2 | + | 3076 | 0.66 | 0.967721 |
Target: 5'- cGGCGGCGGCggCcacGGCggcgGCCG-AGaCCa -3' miRNA: 3'- -UCGCUGUCGaaGa--CCGa---UGGCaUC-GG- -5' |
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9278 | 5' | -54.8 | NC_002512.2 | + | 57605 | 0.66 | 0.967721 |
Target: 5'- cGCGACGGCagaugUCccgGGCgACCG-AGCg -3' miRNA: 3'- uCGCUGUCGa----AGa--CCGaUGGCaUCGg -5' |
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9278 | 5' | -54.8 | NC_002512.2 | + | 1324 | 0.66 | 0.970663 |
Target: 5'- cGCGGuaaggaAGCgUCcGGCUGCCGUccGCCu -3' miRNA: 3'- uCGCUg-----UCGaAGaCCGAUGGCAu-CGG- -5' |
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9278 | 5' | -54.8 | NC_002512.2 | + | 20411 | 0.66 | 0.970663 |
Target: 5'- cGGCGACgAGCagCcGGUguucGCCGgAGCCg -3' miRNA: 3'- -UCGCUG-UCGaaGaCCGa---UGGCaUCGG- -5' |
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9278 | 5' | -54.8 | NC_002512.2 | + | 39761 | 0.66 | 0.970663 |
Target: 5'- aGGCGAgCAGCacgcaGCUGCCGUGgaagcGCCg -3' miRNA: 3'- -UCGCU-GUCGaagacCGAUGGCAU-----CGG- -5' |
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9278 | 5' | -54.8 | NC_002512.2 | + | 59832 | 0.66 | 0.970663 |
Target: 5'- aGGCGGCcGCggCggcGGCgGCCaUGGCCa -3' miRNA: 3'- -UCGCUGuCGaaGa--CCGaUGGcAUCGG- -5' |
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9278 | 5' | -54.8 | NC_002512.2 | + | 62988 | 0.66 | 0.970663 |
Target: 5'- cGCGGacCAGCUUCc-GCUGCUugAGCCa -3' miRNA: 3'- uCGCU--GUCGAAGacCGAUGGcaUCGG- -5' |
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9278 | 5' | -54.8 | NC_002512.2 | + | 98584 | 0.66 | 0.970663 |
Target: 5'- gGGCGGCGGgUcgUCcGcGCUGCaCGUccAGCCg -3' miRNA: 3'- -UCGCUGUCgA--AGaC-CGAUG-GCA--UCGG- -5' |
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9278 | 5' | -54.8 | NC_002512.2 | + | 4582 | 0.66 | 0.973408 |
Target: 5'- gGGCGGCGGagga-GGCggcGCCGcgGGCCg -3' miRNA: 3'- -UCGCUGUCgaagaCCGa--UGGCa-UCGG- -5' |
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9278 | 5' | -54.8 | NC_002512.2 | + | 5177 | 0.66 | 0.976208 |
Target: 5'- gGGCGGCGGCcggccccagcagggCgGGCaggACCGcgGGCCa -3' miRNA: 3'- -UCGCUGUCGaa------------GaCCGa--UGGCa-UCGG- -5' |
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9278 | 5' | -54.8 | NC_002512.2 | + | 122065 | 0.66 | 0.975962 |
Target: 5'- cGGUGAgcaGGCUgaagUGGCUGCCGcacgcGCCg -3' miRNA: 3'- -UCGCUg--UCGAag--ACCGAUGGCau---CGG- -5' |
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9278 | 5' | -54.8 | NC_002512.2 | + | 219578 | 0.66 | 0.975962 |
Target: 5'- uGCGACGGCUccuacgucCUGGUgGCCGacucgcuGCCc -3' miRNA: 3'- uCGCUGUCGAa-------GACCGaUGGCau-----CGG- -5' |
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9278 | 5' | -54.8 | NC_002512.2 | + | 158915 | 0.66 | 0.975715 |
Target: 5'- cGCGGCcgaguacGGCUUCggcgggGGC-GCCGgcGGCCu -3' miRNA: 3'- uCGCUG-------UCGAAGa-----CCGaUGGCa-UCGG- -5' |
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9278 | 5' | -54.8 | NC_002512.2 | + | 103351 | 0.66 | 0.973408 |
Target: 5'- gGGCgGACGGCacggUCgaggucaGGCcGCCGgAGCCg -3' miRNA: 3'- -UCG-CUGUCGa---AGa------CCGaUGGCaUCGG- -5' |
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9278 | 5' | -54.8 | NC_002512.2 | + | 164809 | 0.66 | 0.970663 |
Target: 5'- cGCGACGGga-CUGGagaGCCG-AGCCg -3' miRNA: 3'- uCGCUGUCgaaGACCga-UGGCaUCGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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