Results 41 - 60 of 104 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position |
R_P_ratio![]() |
P value |
Predicted miRNA align pattern | |||||||
9278 | 5' | -54.8 | NC_002512.2 | + | 123151 | 0.67 | 0.941162 |
Target: 5'- gGGCGGCGGCgccgCgaucGCcGCCGaGGCCg -3' miRNA: 3'- -UCGCUGUCGaa--Gac--CGaUGGCaUCGG- -5' |
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9278 | 5' | -54.8 | NC_002512.2 | + | 4420 | 0.67 | 0.945624 |
Target: 5'- cGaCGGCGGCUgCUGGUagACCGgcgggguGCCg -3' miRNA: 3'- uC-GCUGUCGAaGACCGa-UGGCau-----CGG- -5' |
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9278 | 5' | -54.8 | NC_002512.2 | + | 6410 | 0.67 | 0.945624 |
Target: 5'- aGGCGGCGGCggcgCUGGggaaggcgGCCGUcuGGCg -3' miRNA: 3'- -UCGCUGUCGaa--GACCga------UGGCA--UCGg -5' |
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9278 | 5' | -54.8 | NC_002512.2 | + | 104929 | 0.67 | 0.945624 |
Target: 5'- cGCGACGGCcuccucgUCcGGCgucgGCgCGgcGCCg -3' miRNA: 3'- uCGCUGUCGa------AGaCCGa---UG-GCauCGG- -5' |
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9278 | 5' | -54.8 | NC_002512.2 | + | 152534 | 0.67 | 0.949445 |
Target: 5'- cGGCGACGGCgUUCcgacgaaGGCgaACCGUauuuagaGGCCu -3' miRNA: 3'- -UCGCUGUCG-AAGa------CCGa-UGGCA-------UCGG- -5' |
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9278 | 5' | -54.8 | NC_002512.2 | + | 2928 | 0.67 | 0.949858 |
Target: 5'- --gGACAGCUUCuUGGCcucCCGcgcGGCCu -3' miRNA: 3'- ucgCUGUCGAAG-ACCGau-GGCa--UCGG- -5' |
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9278 | 5' | -54.8 | NC_002512.2 | + | 12860 | 0.67 | 0.949858 |
Target: 5'- cGUGAC-GCUggaCaGGCUGCUGaAGCCg -3' miRNA: 3'- uCGCUGuCGAa--GaCCGAUGGCaUCGG- -5' |
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9278 | 5' | -54.8 | NC_002512.2 | + | 74558 | 0.67 | 0.949858 |
Target: 5'- cGGCGACgggAGCgaggUUGGCgagAUCGUccucGGCCa -3' miRNA: 3'- -UCGCUG---UCGaa--GACCGa--UGGCA----UCGG- -5' |
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9278 | 5' | -54.8 | NC_002512.2 | + | 99937 | 0.67 | 0.949858 |
Target: 5'- cGGCGuCGGCUgCU-GCUGCCGccgguGCCu -3' miRNA: 3'- -UCGCuGUCGAaGAcCGAUGGCau---CGG- -5' |
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9278 | 5' | -54.8 | NC_002512.2 | + | 130280 | 0.67 | 0.949858 |
Target: 5'- cGCGACgAGCgcggGGCccgggacgUGCCGUAcGCCg -3' miRNA: 3'- uCGCUG-UCGaagaCCG--------AUGGCAU-CGG- -5' |
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9278 | 5' | -54.8 | NC_002512.2 | + | 91915 | 0.67 | 0.953866 |
Target: 5'- gGGCGGCGGCgcgccgUC-GGCgGCCGacuUGGUCu -3' miRNA: 3'- -UCGCUGUCGa-----AGaCCGaUGGC---AUCGG- -5' |
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9278 | 5' | -54.8 | NC_002512.2 | + | 27754 | 0.67 | 0.953866 |
Target: 5'- cGCGGCGGC----GGCcgagACCGgcGCCa -3' miRNA: 3'- uCGCUGUCGaagaCCGa---UGGCauCGG- -5' |
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9278 | 5' | -54.8 | NC_002512.2 | + | 154592 | 0.67 | 0.957653 |
Target: 5'- gGGCGACGGCggcaUCgucGCcGCCGccGCCg -3' miRNA: 3'- -UCGCUGUCGa---AGac-CGaUGGCauCGG- -5' |
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9278 | 5' | -54.8 | NC_002512.2 | + | 124883 | 0.68 | 0.936469 |
Target: 5'- gGGCGGCGGCcccgUCacGGCgACCGUucGGCg -3' miRNA: 3'- -UCGCUGUCGa---AGa-CCGaUGGCA--UCGg -5' |
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9278 | 5' | -54.8 | NC_002512.2 | + | 75284 | 0.68 | 0.931545 |
Target: 5'- cGGCGGCGGCggC-GGCgacgaugccGCCGUcGCCc -3' miRNA: 3'- -UCGCUGUCGaaGaCCGa--------UGGCAuCGG- -5' |
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9278 | 5' | -54.8 | NC_002512.2 | + | 146296 | 0.68 | 0.931545 |
Target: 5'- cGGCGACuGCUUCgacaccGGCguguacgGCCacGGCCg -3' miRNA: 3'- -UCGCUGuCGAAGa-----CCGa------UGGcaUCGG- -5' |
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9278 | 5' | -54.8 | NC_002512.2 | + | 106578 | 0.68 | 0.926388 |
Target: 5'- cGGCgGACAcccGCUUCuUGGCgaACCGggccAGCCg -3' miRNA: 3'- -UCG-CUGU---CGAAG-ACCGa-UGGCa---UCGG- -5' |
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9278 | 5' | -54.8 | NC_002512.2 | + | 74570 | 0.68 | 0.920998 |
Target: 5'- cGCGACcugGGCgcUCUGGUgcucgagGCCGgGGCCc -3' miRNA: 3'- uCGCUG---UCGa-AGACCGa------UGGCaUCGG- -5' |
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9278 | 5' | -54.8 | NC_002512.2 | + | 185199 | 0.68 | 0.915376 |
Target: 5'- cGCGGCGGCggUCgacGCcGCgGUGGCCc -3' miRNA: 3'- uCGCUGUCGa-AGac-CGaUGgCAUCGG- -5' |
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9278 | 5' | -54.8 | NC_002512.2 | + | 7619 | 0.68 | 0.915376 |
Target: 5'- cGCGGC-GCgUUUGGUcACCGUggaGGCCa -3' miRNA: 3'- uCGCUGuCGaAGACCGaUGGCA---UCGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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