miRNA display CGI


Results 41 - 60 of 104 are showing below:
Show page:



<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9278 5' -54.8 NC_002512.2 + 123151 0.67 0.941162
Target:  5'- gGGCGGCGGCgccgCgaucGCcGCCGaGGCCg -3'
miRNA:   3'- -UCGCUGUCGaa--Gac--CGaUGGCaUCGG- -5'
9278 5' -54.8 NC_002512.2 + 4420 0.67 0.945624
Target:  5'- cGaCGGCGGCUgCUGGUagACCGgcgggguGCCg -3'
miRNA:   3'- uC-GCUGUCGAaGACCGa-UGGCau-----CGG- -5'
9278 5' -54.8 NC_002512.2 + 6410 0.67 0.945624
Target:  5'- aGGCGGCGGCggcgCUGGggaaggcgGCCGUcuGGCg -3'
miRNA:   3'- -UCGCUGUCGaa--GACCga------UGGCA--UCGg -5'
9278 5' -54.8 NC_002512.2 + 104929 0.67 0.945624
Target:  5'- cGCGACGGCcuccucgUCcGGCgucgGCgCGgcGCCg -3'
miRNA:   3'- uCGCUGUCGa------AGaCCGa---UG-GCauCGG- -5'
9278 5' -54.8 NC_002512.2 + 152534 0.67 0.949445
Target:  5'- cGGCGACGGCgUUCcgacgaaGGCgaACCGUauuuagaGGCCu -3'
miRNA:   3'- -UCGCUGUCG-AAGa------CCGa-UGGCA-------UCGG- -5'
9278 5' -54.8 NC_002512.2 + 2928 0.67 0.949858
Target:  5'- --gGACAGCUUCuUGGCcucCCGcgcGGCCu -3'
miRNA:   3'- ucgCUGUCGAAG-ACCGau-GGCa--UCGG- -5'
9278 5' -54.8 NC_002512.2 + 12860 0.67 0.949858
Target:  5'- cGUGAC-GCUggaCaGGCUGCUGaAGCCg -3'
miRNA:   3'- uCGCUGuCGAa--GaCCGAUGGCaUCGG- -5'
9278 5' -54.8 NC_002512.2 + 74558 0.67 0.949858
Target:  5'- cGGCGACgggAGCgaggUUGGCgagAUCGUccucGGCCa -3'
miRNA:   3'- -UCGCUG---UCGaa--GACCGa--UGGCA----UCGG- -5'
9278 5' -54.8 NC_002512.2 + 99937 0.67 0.949858
Target:  5'- cGGCGuCGGCUgCU-GCUGCCGccgguGCCu -3'
miRNA:   3'- -UCGCuGUCGAaGAcCGAUGGCau---CGG- -5'
9278 5' -54.8 NC_002512.2 + 130280 0.67 0.949858
Target:  5'- cGCGACgAGCgcggGGCccgggacgUGCCGUAcGCCg -3'
miRNA:   3'- uCGCUG-UCGaagaCCG--------AUGGCAU-CGG- -5'
9278 5' -54.8 NC_002512.2 + 91915 0.67 0.953866
Target:  5'- gGGCGGCGGCgcgccgUC-GGCgGCCGacuUGGUCu -3'
miRNA:   3'- -UCGCUGUCGa-----AGaCCGaUGGC---AUCGG- -5'
9278 5' -54.8 NC_002512.2 + 27754 0.67 0.953866
Target:  5'- cGCGGCGGC----GGCcgagACCGgcGCCa -3'
miRNA:   3'- uCGCUGUCGaagaCCGa---UGGCauCGG- -5'
9278 5' -54.8 NC_002512.2 + 154592 0.67 0.957653
Target:  5'- gGGCGACGGCggcaUCgucGCcGCCGccGCCg -3'
miRNA:   3'- -UCGCUGUCGa---AGac-CGaUGGCauCGG- -5'
9278 5' -54.8 NC_002512.2 + 124883 0.68 0.936469
Target:  5'- gGGCGGCGGCcccgUCacGGCgACCGUucGGCg -3'
miRNA:   3'- -UCGCUGUCGa---AGa-CCGaUGGCA--UCGg -5'
9278 5' -54.8 NC_002512.2 + 75284 0.68 0.931545
Target:  5'- cGGCGGCGGCggC-GGCgacgaugccGCCGUcGCCc -3'
miRNA:   3'- -UCGCUGUCGaaGaCCGa--------UGGCAuCGG- -5'
9278 5' -54.8 NC_002512.2 + 146296 0.68 0.931545
Target:  5'- cGGCGACuGCUUCgacaccGGCguguacgGCCacGGCCg -3'
miRNA:   3'- -UCGCUGuCGAAGa-----CCGa------UGGcaUCGG- -5'
9278 5' -54.8 NC_002512.2 + 106578 0.68 0.926388
Target:  5'- cGGCgGACAcccGCUUCuUGGCgaACCGggccAGCCg -3'
miRNA:   3'- -UCG-CUGU---CGAAG-ACCGa-UGGCa---UCGG- -5'
9278 5' -54.8 NC_002512.2 + 74570 0.68 0.920998
Target:  5'- cGCGACcugGGCgcUCUGGUgcucgagGCCGgGGCCc -3'
miRNA:   3'- uCGCUG---UCGa-AGACCGa------UGGCaUCGG- -5'
9278 5' -54.8 NC_002512.2 + 185199 0.68 0.915376
Target:  5'- cGCGGCGGCggUCgacGCcGCgGUGGCCc -3'
miRNA:   3'- uCGCUGUCGa-AGac-CGaUGgCAUCGG- -5'
9278 5' -54.8 NC_002512.2 + 7619 0.68 0.915376
Target:  5'- cGCGGC-GCgUUUGGUcACCGUggaGGCCa -3'
miRNA:   3'- uCGCUGuCGaAGACCGaUGGCA---UCGG- -5'
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home



TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.