miRNA display CGI


Results 41 - 60 of 104 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9278 5' -54.8 NC_002512.2 + 94648 0.67 0.953866
Target:  5'- cGGaCGACGGCcUCgaGGCggcCCGgGGCCg -3'
miRNA:   3'- -UC-GCUGUCGaAGa-CCGau-GGCaUCGG- -5'
9278 5' -54.8 NC_002512.2 + 96278 0.68 0.926388
Target:  5'- -cCGGCAgGCgggggGGCUGCCGcgGGCCg -3'
miRNA:   3'- ucGCUGU-CGaaga-CCGAUGGCa-UCGG- -5'
9278 5' -54.8 NC_002512.2 + 98584 0.66 0.970663
Target:  5'- gGGCGGCGGgUcgUCcGcGCUGCaCGUccAGCCg -3'
miRNA:   3'- -UCGCUGUCgA--AGaC-CGAUG-GCA--UCGG- -5'
9278 5' -54.8 NC_002512.2 + 99937 0.67 0.949858
Target:  5'- cGGCGuCGGCUgCU-GCUGCCGccgguGCCu -3'
miRNA:   3'- -UCGCuGUCGAaGAcCGAUGGCau---CGG- -5'
9278 5' -54.8 NC_002512.2 + 100455 0.66 0.970663
Target:  5'- gGGCGACGGCgaagagcgcgUUCUcGGU---CGUGGCCc -3'
miRNA:   3'- -UCGCUGUCG----------AAGA-CCGaugGCAUCGG- -5'
9278 5' -54.8 NC_002512.2 + 100623 0.67 0.949858
Target:  5'- -aCGACAGCUUCUGGagcgGCaggGGCUu -3'
miRNA:   3'- ucGCUGUCGAAGACCga--UGgcaUCGG- -5'
9278 5' -54.8 NC_002512.2 + 103351 0.66 0.973408
Target:  5'- gGGCgGACGGCacggUCgaggucaGGCcGCCGgAGCCg -3'
miRNA:   3'- -UCG-CUGUCGa---AGa------CCGaUGGCaUCGG- -5'
9278 5' -54.8 NC_002512.2 + 104297 0.68 0.926388
Target:  5'- -cCGGCGGCgggaGGCUGCCGUgaAGUCu -3'
miRNA:   3'- ucGCUGUCGaagaCCGAUGGCA--UCGG- -5'
9278 5' -54.8 NC_002512.2 + 104929 0.67 0.945624
Target:  5'- cGCGACGGCcuccucgUCcGGCgucgGCgCGgcGCCg -3'
miRNA:   3'- uCGCUGUCGa------AGaCCGa---UG-GCauCGG- -5'
9278 5' -54.8 NC_002512.2 + 105061 0.68 0.921548
Target:  5'- cGGCGACGGCggcgugucgggguagUCUcccGGCU-CCGUcAGCUg -3'
miRNA:   3'- -UCGCUGUCGa--------------AGA---CCGAuGGCA-UCGG- -5'
9278 5' -54.8 NC_002512.2 + 106578 0.68 0.926388
Target:  5'- cGGCgGACAcccGCUUCuUGGCgaACCGggccAGCCg -3'
miRNA:   3'- -UCG-CUGU---CGAAG-ACCGa-UGGCa---UCGG- -5'
9278 5' -54.8 NC_002512.2 + 107538 0.71 0.803456
Target:  5'- cGGgGGCAGCUUCUGGaggacguuguCCGUcccccgccucagGGCCa -3'
miRNA:   3'- -UCgCUGUCGAAGACCgau-------GGCA------------UCGG- -5'
9278 5' -54.8 NC_002512.2 + 108488 0.66 0.967721
Target:  5'- cGUGACGGUcgUCaagGGCgagGCCG-GGCCc -3'
miRNA:   3'- uCGCUGUCGa-AGa--CCGa--UGGCaUCGG- -5'
9278 5' -54.8 NC_002512.2 + 109571 0.72 0.769078
Target:  5'- cGCGACGGCcugUCcGuGCUACCGgcugcacaAGCCg -3'
miRNA:   3'- uCGCUGUCGa--AGaC-CGAUGGCa-------UCGG- -5'
9278 5' -54.8 NC_002512.2 + 112443 0.79 0.37034
Target:  5'- cGGCGACAGCUUCUGGUgcAUCacGGCCa -3'
miRNA:   3'- -UCGCUGUCGAAGACCGa-UGGcaUCGG- -5'
9278 5' -54.8 NC_002512.2 + 116663 0.66 0.970663
Target:  5'- -aCGuACAGCUcgUGGCggACCGcgAGCCg -3'
miRNA:   3'- ucGC-UGUCGAagACCGa-UGGCa-UCGG- -5'
9278 5' -54.8 NC_002512.2 + 117032 0.67 0.949858
Target:  5'- cGCGGCcaucgAGCUguUCgGGCUgcuGCCGUucguGCCg -3'
miRNA:   3'- uCGCUG-----UCGA--AGaCCGA---UGGCAu---CGG- -5'
9278 5' -54.8 NC_002512.2 + 122065 0.66 0.975962
Target:  5'- cGGUGAgcaGGCUgaagUGGCUGCCGcacgcGCCg -3'
miRNA:   3'- -UCGCUg--UCGAag--ACCGAUGGCau---CGG- -5'
9278 5' -54.8 NC_002512.2 + 123151 0.67 0.941162
Target:  5'- gGGCGGCGGCgccgCgaucGCcGCCGaGGCCg -3'
miRNA:   3'- -UCGCUGUCGaa--Gac--CGaUGGCaUCGG- -5'
9278 5' -54.8 NC_002512.2 + 124172 0.7 0.854679
Target:  5'- gAGCGGgAGUgcacCUGGCUGCuCGUccGCCg -3'
miRNA:   3'- -UCGCUgUCGaa--GACCGAUG-GCAu-CGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.