miRNA display CGI


Results 21 - 40 of 104 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9278 5' -54.8 NC_002512.2 + 27754 0.67 0.953866
Target:  5'- cGCGGCGGC----GGCcgagACCGgcGCCa -3'
miRNA:   3'- uCGCUGUCGaagaCCGa---UGGCauCGG- -5'
9278 5' -54.8 NC_002512.2 + 34855 0.7 0.830735
Target:  5'- cGCGGCGGCUUCUucGUcGCCGUcgucGCCg -3'
miRNA:   3'- uCGCUGUCGAAGAc-CGaUGGCAu---CGG- -5'
9278 5' -54.8 NC_002512.2 + 38913 0.67 0.941162
Target:  5'- cGGCGACGGCccggaggGGCcGCCGcGGCg -3'
miRNA:   3'- -UCGCUGUCGaaga---CCGaUGGCaUCGg -5'
9278 5' -54.8 NC_002512.2 + 39761 0.66 0.970663
Target:  5'- aGGCGAgCAGCacgcaGCUGCCGUGgaagcGCCg -3'
miRNA:   3'- -UCGCU-GUCGaagacCGAUGGCAU-----CGG- -5'
9278 5' -54.8 NC_002512.2 + 54264 0.68 0.936469
Target:  5'- gGGCGGCGGCgUC-GGCgACCcUGGCa -3'
miRNA:   3'- -UCGCUGUCGaAGaCCGaUGGcAUCGg -5'
9278 5' -54.8 NC_002512.2 + 57443 0.69 0.876859
Target:  5'- gGGCGuCGauCUUCUGGCgACUGUAGCg -3'
miRNA:   3'- -UCGCuGUc-GAAGACCGaUGGCAUCGg -5'
9278 5' -54.8 NC_002512.2 + 57605 0.66 0.967721
Target:  5'- cGCGACGGCagaugUCccgGGCgACCG-AGCg -3'
miRNA:   3'- uCGCUGUCGa----AGa--CCGaUGGCaUCGg -5'
9278 5' -54.8 NC_002512.2 + 58985 0.66 0.964575
Target:  5'- aAGCG-CAGCgugUCcaGGCgGCCGUcggcgaggAGCCg -3'
miRNA:   3'- -UCGCuGUCGa--AGa-CCGaUGGCA--------UCGG- -5'
9278 5' -54.8 NC_002512.2 + 59832 0.66 0.970663
Target:  5'- aGGCGGCcGCggCggcGGCgGCCaUGGCCa -3'
miRNA:   3'- -UCGCUGuCGaaGa--CCGaUGGcAUCGG- -5'
9278 5' -54.8 NC_002512.2 + 62988 0.66 0.970663
Target:  5'- cGCGGacCAGCUUCc-GCUGCUugAGCCa -3'
miRNA:   3'- uCGCU--GUCGAAGacCGAUGGcaUCGG- -5'
9278 5' -54.8 NC_002512.2 + 68905 0.72 0.778311
Target:  5'- gGGCGGuCGuGCUgCUGGCcGCCGcGGCCu -3'
miRNA:   3'- -UCGCU-GU-CGAaGACCGaUGGCaUCGG- -5'
9278 5' -54.8 NC_002512.2 + 69082 0.74 0.641447
Target:  5'- cGgGGCGGCUgguaCU-GCUGCCGUGGCUg -3'
miRNA:   3'- uCgCUGUCGAa---GAcCGAUGGCAUCGG- -5'
9278 5' -54.8 NC_002512.2 + 73735 1.13 0.00312
Target:  5'- cAGCGACAGCUUCUGGCUACCGUAGCCg -3'
miRNA:   3'- -UCGCUGUCGAAGACCGAUGGCAUCGG- -5'
9278 5' -54.8 NC_002512.2 + 74558 0.67 0.949858
Target:  5'- cGGCGACgggAGCgaggUUGGCgagAUCGUccucGGCCa -3'
miRNA:   3'- -UCGCUG---UCGaa--GACCGa--UGGCA----UCGG- -5'
9278 5' -54.8 NC_002512.2 + 74570 0.68 0.920998
Target:  5'- cGCGACcugGGCgcUCUGGUgcucgagGCCGgGGCCc -3'
miRNA:   3'- uCGCUG---UCGa-AGACCGa------UGGCaUCGG- -5'
9278 5' -54.8 NC_002512.2 + 75284 0.68 0.931545
Target:  5'- cGGCGGCGGCggC-GGCgacgaugccGCCGUcGCCc -3'
miRNA:   3'- -UCGCUGUCGaaGaCCGa--------UGGCAuCGG- -5'
9278 5' -54.8 NC_002512.2 + 81033 0.68 0.920998
Target:  5'- aGGCGGCAGCcggcgUUCcGGCaGCgGUGcGCCc -3'
miRNA:   3'- -UCGCUGUCG-----AAGaCCGaUGgCAU-CGG- -5'
9278 5' -54.8 NC_002512.2 + 83557 0.71 0.796385
Target:  5'- gAGCGGCAuGCggacgGaGCgGCCGUGGCCg -3'
miRNA:   3'- -UCGCUGU-CGaaga-C-CGaUGGCAUCGG- -5'
9278 5' -54.8 NC_002512.2 + 90904 0.68 0.936469
Target:  5'- cGgGACGGCcggaCUGGCgGCCGcgaacggGGCCg -3'
miRNA:   3'- uCgCUGUCGaa--GACCGaUGGCa------UCGG- -5'
9278 5' -54.8 NC_002512.2 + 91915 0.67 0.953866
Target:  5'- gGGCGGCGGCgcgccgUC-GGCgGCCGacuUGGUCu -3'
miRNA:   3'- -UCGCUGUCGa-----AGaCCGaUGGC---AUCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.