miRNA display CGI


Results 21 - 40 of 104 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9278 5' -54.8 NC_002512.2 + 155643 0.71 0.822392
Target:  5'- cGGCGGC-GCUUC-GGCguccgGCCGUucGCCc -3'
miRNA:   3'- -UCGCUGuCGAAGaCCGa----UGGCAu-CGG- -5'
9278 5' -54.8 NC_002512.2 + 214930 0.71 0.822392
Target:  5'- cGGCcGCGGCUUCgucCUcCCGUGGCCg -3'
miRNA:   3'- -UCGcUGUCGAAGaccGAuGGCAUCGG- -5'
9278 5' -54.8 NC_002512.2 + 34855 0.7 0.830735
Target:  5'- cGCGGCGGCUUCUucGUcGCCGUcgucGCCg -3'
miRNA:   3'- uCGCUGUCGAAGAc-CGaUGGCAu---CGG- -5'
9278 5' -54.8 NC_002512.2 + 146714 0.7 0.846885
Target:  5'- gAGaCGACGGCgg--GGCggcgGCCGcGGCCg -3'
miRNA:   3'- -UC-GCUGUCGaagaCCGa---UGGCaUCGG- -5'
9278 5' -54.8 NC_002512.2 + 5009 0.7 0.854679
Target:  5'- aGGCGGcCGGCga--GGCgggaaaccagGCCGUGGCCa -3'
miRNA:   3'- -UCGCU-GUCGaagaCCGa---------UGGCAUCGG- -5'
9278 5' -54.8 NC_002512.2 + 124172 0.7 0.854679
Target:  5'- gAGCGGgAGUgcacCUGGCUGCuCGUccGCCg -3'
miRNA:   3'- -UCGCUgUCGaa--GACCGAUG-GCAu-CGG- -5'
9278 5' -54.8 NC_002512.2 + 179233 0.7 0.869671
Target:  5'- uGCGcCAGCagCUGGCggGCCGU-GUCg -3'
miRNA:   3'- uCGCuGUCGaaGACCGa-UGGCAuCGG- -5'
9278 5' -54.8 NC_002512.2 + 57443 0.69 0.876859
Target:  5'- gGGCGuCGauCUUCUGGCgACUGUAGCg -3'
miRNA:   3'- -UCGCuGUc-GAAGACCGaUGGCAUCGg -5'
9278 5' -54.8 NC_002512.2 + 125154 0.69 0.876859
Target:  5'- cGGCGACgcggagAGCUUCgaGGaCU-UCGUGGCCg -3'
miRNA:   3'- -UCGCUG------UCGAAGa-CC-GAuGGCAUCGG- -5'
9278 5' -54.8 NC_002512.2 + 127266 0.69 0.876859
Target:  5'- cGGCGACGGCgUUCccccgGGCguugGCgGcGGCCg -3'
miRNA:   3'- -UCGCUGUCG-AAGa----CCGa---UGgCaUCGG- -5'
9278 5' -54.8 NC_002512.2 + 196191 0.69 0.883833
Target:  5'- gGGCGACGGCcggguccCUGGCgagccuCCGgcgcgugAGCCu -3'
miRNA:   3'- -UCGCUGUCGaa-----GACCGau----GGCa------UCGG- -5'
9278 5' -54.8 NC_002512.2 + 132458 0.69 0.883833
Target:  5'- cAGCGACAGCgcca-GCaccAUCGUGGCCa -3'
miRNA:   3'- -UCGCUGUCGaagacCGa--UGGCAUCGG- -5'
9278 5' -54.8 NC_002512.2 + 149869 0.68 0.909522
Target:  5'- cAGCGACgccucguccGGC-UCcGGCUGCCGcuGCCu -3'
miRNA:   3'- -UCGCUG---------UCGaAGaCCGAUGGCauCGG- -5'
9278 5' -54.8 NC_002512.2 + 185199 0.68 0.915376
Target:  5'- cGCGGCGGCggUCgacGCcGCgGUGGCCc -3'
miRNA:   3'- uCGCUGUCGa-AGac-CGaUGgCAUCGG- -5'
9278 5' -54.8 NC_002512.2 + 7619 0.68 0.915376
Target:  5'- cGCGGC-GCgUUUGGUcACCGUggaGGCCa -3'
miRNA:   3'- uCGCUGuCGaAGACCGaUGGCA---UCGG- -5'
9278 5' -54.8 NC_002512.2 + 74570 0.68 0.920998
Target:  5'- cGCGACcugGGCgcUCUGGUgcucgagGCCGgGGCCc -3'
miRNA:   3'- uCGCUG---UCGa-AGACCGa------UGGCaUCGG- -5'
9278 5' -54.8 NC_002512.2 + 81033 0.68 0.920998
Target:  5'- aGGCGGCAGCcggcgUUCcGGCaGCgGUGcGCCc -3'
miRNA:   3'- -UCGCUGUCG-----AAGaCCGaUGgCAU-CGG- -5'
9278 5' -54.8 NC_002512.2 + 2037 0.68 0.920998
Target:  5'- gAGCGACAGCagggugaUC-GGCUG-CGgcGCCa -3'
miRNA:   3'- -UCGCUGUCGa------AGaCCGAUgGCauCGG- -5'
9278 5' -54.8 NC_002512.2 + 105061 0.68 0.921548
Target:  5'- cGGCGACGGCggcgugucgggguagUCUcccGGCU-CCGUcAGCUg -3'
miRNA:   3'- -UCGCUGUCGa--------------AGA---CCGAuGGCA-UCGG- -5'
9278 5' -54.8 NC_002512.2 + 106578 0.68 0.926388
Target:  5'- cGGCgGACAcccGCUUCuUGGCgaACCGggccAGCCg -3'
miRNA:   3'- -UCG-CUGU---CGAAG-ACCGa-UGGCa---UCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.