miRNA display CGI


Results 1 - 20 of 104 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9278 5' -54.8 NC_002512.2 + 73735 1.13 0.00312
Target:  5'- cAGCGACAGCUUCUGGCUACCGUAGCCg -3'
miRNA:   3'- -UCGCUGUCGAAGACCGAUGGCAUCGG- -5'
9278 5' -54.8 NC_002512.2 + 207880 0.81 0.296371
Target:  5'- cGGgGACGGCUUCUGGCgcucucgGCgGUGGCUc -3'
miRNA:   3'- -UCgCUGUCGAAGACCGa------UGgCAUCGG- -5'
9278 5' -54.8 NC_002512.2 + 112443 0.79 0.37034
Target:  5'- cGGCGACAGCUUCUGGUgcAUCacGGCCa -3'
miRNA:   3'- -UCGCUGUCGAAGACCGa-UGGcaUCGG- -5'
9278 5' -54.8 NC_002512.2 + 4745 0.77 0.502583
Target:  5'- uGCGACGGCUgcUgUGGCaGCUGUGGCa -3'
miRNA:   3'- uCGCUGUCGA--AgACCGaUGGCAUCGg -5'
9278 5' -54.8 NC_002512.2 + 222404 0.74 0.661618
Target:  5'- gAGCGccGCGGCUUC-GGCggggGCCGgcAGCCg -3'
miRNA:   3'- -UCGC--UGUCGAAGaCCGa---UGGCa-UCGG- -5'
9278 5' -54.8 NC_002512.2 + 69082 0.74 0.641447
Target:  5'- cGgGGCGGCUgguaCU-GCUGCCGUGGCUg -3'
miRNA:   3'- uCgCUGUCGAa---GAcCGAUGGCAUCGG- -5'
9278 5' -54.8 NC_002512.2 + 147643 0.74 0.641447
Target:  5'- cGGCGGCGGCcgCUcccGCUACCGUcaccGGCCc -3'
miRNA:   3'- -UCGCUGUCGaaGAc--CGAUGGCA----UCGG- -5'
9278 5' -54.8 NC_002512.2 + 216377 0.74 0.630336
Target:  5'- cGCaGCAGCUUcCUGGCcGCCGUcuccguguuguucGGCCg -3'
miRNA:   3'- uCGcUGUCGAA-GACCGaUGGCA-------------UCGG- -5'
9278 5' -54.8 NC_002512.2 + 226790 0.73 0.721309
Target:  5'- gGGCGACGccGUggUCUcGGCcgccGCCGUGGCCg -3'
miRNA:   3'- -UCGCUGU--CGa-AGA-CCGa---UGGCAUCGG- -5'
9278 5' -54.8 NC_002512.2 + 13458 0.72 0.731047
Target:  5'- gGGCGGCGGCgagcCUGGCguccccggaccUGCUGcGGCCg -3'
miRNA:   3'- -UCGCUGUCGaa--GACCG-----------AUGGCaUCGG- -5'
9278 5' -54.8 NC_002512.2 + 7328 0.72 0.731047
Target:  5'- cGCGGCGGgacggUCgGGUcGCCGUAGCCc -3'
miRNA:   3'- uCGCUGUCga---AGaCCGaUGGCAUCGG- -5'
9278 5' -54.8 NC_002512.2 + 229593 0.72 0.769078
Target:  5'- gGGCGugGGCUgccCUGGCcccCCGUcgcGCCg -3'
miRNA:   3'- -UCGCugUCGAa--GACCGau-GGCAu--CGG- -5'
9278 5' -54.8 NC_002512.2 + 190 0.72 0.769078
Target:  5'- gGGCGugGGCUgccCUGGCcccCCGUcgcGCCg -3'
miRNA:   3'- -UCGCugUCGAa--GACCGau-GGCAu--CGG- -5'
9278 5' -54.8 NC_002512.2 + 125441 0.72 0.731047
Target:  5'- uGCGAgAcguGCUUCUGGUgcgccaCGUAGCCg -3'
miRNA:   3'- uCGCUgU---CGAAGACCGaug---GCAUCGG- -5'
9278 5' -54.8 NC_002512.2 + 68905 0.72 0.778311
Target:  5'- gGGCGGuCGuGCUgCUGGCcGCCGcGGCCu -3'
miRNA:   3'- -UCGCU-GU-CGAaGACCGaUGGCaUCGG- -5'
9278 5' -54.8 NC_002512.2 + 109571 0.72 0.769078
Target:  5'- cGCGACGGCcugUCcGuGCUACCGgcugcacaAGCCg -3'
miRNA:   3'- uCGCUGUCGa--AGaC-CGAUGGCa-------UCGG- -5'
9278 5' -54.8 NC_002512.2 + 207602 0.72 0.759727
Target:  5'- uGCGACGGCggC-GGCUGCUGcGGCg -3'
miRNA:   3'- uCGCUGUCGaaGaCCGAUGGCaUCGg -5'
9278 5' -54.8 NC_002512.2 + 155643 0.71 0.822392
Target:  5'- cGGCGGC-GCUUC-GGCguccgGCCGUucGCCc -3'
miRNA:   3'- -UCGCUGuCGAAGaCCGa----UGGCAu-CGG- -5'
9278 5' -54.8 NC_002512.2 + 214930 0.71 0.822392
Target:  5'- cGGCcGCGGCUUCgucCUcCCGUGGCCg -3'
miRNA:   3'- -UCGcUGUCGAAGaccGAuGGCAUCGG- -5'
9278 5' -54.8 NC_002512.2 + 190970 0.71 0.796385
Target:  5'- cGCGGCGGCcccUCcGGC-GCCGUcGCCg -3'
miRNA:   3'- uCGCUGUCGa--AGaCCGaUGGCAuCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.