miRNA display CGI


Results 41 - 60 of 121 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9281 3' -53.2 NC_002512.2 + 130852 0.67 0.978332
Target:  5'- cGGCGGucGGgCGAGGc--CCCCAccgGGCg -3'
miRNA:   3'- -CCGCC--UCaGUUCCuauGGGGUaa-CCG- -5'
9281 3' -53.2 NC_002512.2 + 18919 0.67 0.978332
Target:  5'- aGGCGcGAcaCAGGGcccggacgACCUCGUUGGCc -3'
miRNA:   3'- -CCGC-CUcaGUUCCua------UGGGGUAACCG- -5'
9281 3' -53.2 NC_002512.2 + 118389 0.67 0.978332
Target:  5'- cGGCGGAcGUCc-GGAcuCUCCGUcuacUGGCa -3'
miRNA:   3'- -CCGCCU-CAGuuCCUauGGGGUA----ACCG- -5'
9281 3' -53.2 NC_002512.2 + 32280 0.67 0.984407
Target:  5'- aGGCGGcccgCAugAGGAgggcgGCCUCGUagUGGCa -3'
miRNA:   3'- -CCGCCuca-GU--UCCUa----UGGGGUA--ACCG- -5'
9281 3' -53.2 NC_002512.2 + 82429 0.67 0.982547
Target:  5'- cGGCGGAGgggaCGAGGggGCgucggucccgcuCCCGaaGGCg -3'
miRNA:   3'- -CCGCCUCa---GUUCCuaUG------------GGGUaaCCG- -5'
9281 3' -53.2 NC_002512.2 + 187268 0.67 0.986113
Target:  5'- uGGCGGAcGUCGccucgaaGUGCCCCcg-GGCu -3'
miRNA:   3'- -CCGCCU-CAGUucc----UAUGGGGuaaCCG- -5'
9281 3' -53.2 NC_002512.2 + 181999 0.67 0.986113
Target:  5'- uGGCGGAcGUCcucGGGGUcagGCCCa---GGCg -3'
miRNA:   3'- -CCGCCU-CAGu--UCCUA---UGGGguaaCCG- -5'
9281 3' -53.2 NC_002512.2 + 127659 0.67 0.986113
Target:  5'- cGGaCGGccGGUCGAGGGccGCUCCGgccgcGGCg -3'
miRNA:   3'- -CC-GCC--UCAGUUCCUa-UGGGGUaa---CCG- -5'
9281 3' -53.2 NC_002512.2 + 201082 0.67 0.985449
Target:  5'- uGCGGGGUCuGGGAcagcaUGCCCacgaagaugaGGCa -3'
miRNA:   3'- cCGCCUCAGuUCCU-----AUGGGguaa------CCG- -5'
9281 3' -53.2 NC_002512.2 + 87516 0.67 0.984407
Target:  5'- cGCGGAGcCGAuggcGGGUAUCuCCGUUcucGGCu -3'
miRNA:   3'- cCGCCUCaGUU----CCUAUGG-GGUAA---CCG- -5'
9281 3' -53.2 NC_002512.2 + 96626 0.67 0.982547
Target:  5'- cGGgGGAGggCGAGGAaACCgCGaccggGGCg -3'
miRNA:   3'- -CCgCCUCa-GUUCCUaUGGgGUaa---CCG- -5'
9281 3' -53.2 NC_002512.2 + 136390 0.67 0.982547
Target:  5'- cGGCcaGAG-CAAGGAgggaaccaACCCCAUcUGGUa -3'
miRNA:   3'- -CCGc-CUCaGUUCCUa-------UGGGGUA-ACCG- -5'
9281 3' -53.2 NC_002512.2 + 229524 0.67 0.980525
Target:  5'- cGGCGGAGaaAAGGAgaACgCCGgggagccgGGCg -3'
miRNA:   3'- -CCGCCUCagUUCCUa-UGgGGUaa------CCG- -5'
9281 3' -53.2 NC_002512.2 + 159359 0.67 0.980525
Target:  5'- cGGCgucGGGGUCGGGGcg-UCCCAUUcGCg -3'
miRNA:   3'- -CCG---CCUCAGUUCCuauGGGGUAAcCG- -5'
9281 3' -53.2 NC_002512.2 + 177274 0.67 0.978332
Target:  5'- --gGGAGUcCAGGGAcuugGCCagGUUGGCg -3'
miRNA:   3'- ccgCCUCA-GUUCCUa---UGGggUAACCG- -5'
9281 3' -53.2 NC_002512.2 + 121434 0.67 0.98331
Target:  5'- cGCGGAGUCGgccccggagcccugaGGGGUccGCCCCGc--GCc -3'
miRNA:   3'- cCGCCUCAGU---------------UCCUA--UGGGGUaacCG- -5'
9281 3' -53.2 NC_002512.2 + 108156 0.67 0.985949
Target:  5'- aGGaCGGAGggccucgucagcaUCAcGGucGCCCCggUGGCg -3'
miRNA:   3'- -CC-GCCUC-------------AGUuCCuaUGGGGuaACCG- -5'
9281 3' -53.2 NC_002512.2 + 34357 0.68 0.964575
Target:  5'- gGGCGGAG--GAGG-UACCCCgagaaguaGUaGGCg -3'
miRNA:   3'- -CCGCCUCagUUCCuAUGGGG--------UAaCCG- -5'
9281 3' -53.2 NC_002512.2 + 19895 0.68 0.970663
Target:  5'- aGGCGGucgCgGAGGA-ACCCCgggaagccGUUGGCg -3'
miRNA:   3'- -CCGCCucaG-UUCCUaUGGGG--------UAACCG- -5'
9281 3' -53.2 NC_002512.2 + 143582 0.68 0.973408
Target:  5'- cGGCGGAG--AGGGAggcGCCCUugcGUgcgGGCc -3'
miRNA:   3'- -CCGCCUCagUUCCUa--UGGGG---UAa--CCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.