Results 41 - 60 of 121 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
9281 | 3' | -53.2 | NC_002512.2 | + | 127925 | 0.69 | 0.941162 |
Target: 5'- gGGCGGA-UCGguAGGGUACCCgA--GGCc -3' miRNA: 3'- -CCGCCUcAGU--UCCUAUGGGgUaaCCG- -5' |
|||||||
9281 | 3' | -53.2 | NC_002512.2 | + | 95281 | 0.76 | 0.681697 |
Target: 5'- cGGCGGGGUC-GGGu--UCCCGUcGGCg -3' miRNA: 3'- -CCGCCUCAGuUCCuauGGGGUAaCCG- -5' |
|||||||
9281 | 3' | -53.2 | NC_002512.2 | + | 7255 | 0.73 | 0.805209 |
Target: 5'- cGGCGGAG-CGgcguccgucGGGAUcgggcgcgagGCCCCGggGGCc -3' miRNA: 3'- -CCGCCUCaGU---------UCCUA----------UGGGGUaaCCG- -5' |
|||||||
9281 | 3' | -53.2 | NC_002512.2 | + | 9080 | 0.72 | 0.862276 |
Target: 5'- cGGCGGgaccacgagcgGGUCGAGGAcgauCCCCAgcaGGUc -3' miRNA: 3'- -CCGCC-----------UCAGUUCCUau--GGGGUaa-CCG- -5' |
|||||||
9281 | 3' | -53.2 | NC_002512.2 | + | 34073 | 0.66 | 0.991548 |
Target: 5'- cGGCGGcGUCGAcGAUGuCCCCGca-GCg -3' miRNA: 3'- -CCGCCuCAGUUcCUAU-GGGGUaacCG- -5' |
|||||||
9281 | 3' | -53.2 | NC_002512.2 | + | 96 | 0.66 | 0.989092 |
Target: 5'- cGGCGGGGggaGAGGAgGCCggCAggaGGCg -3' miRNA: 3'- -CCGCCUCag-UUCCUaUGGg-GUaa-CCG- -5' |
|||||||
9281 | 3' | -53.2 | NC_002512.2 | + | 102520 | 0.66 | 0.987672 |
Target: 5'- cGCGGccGUCGGGGGUcagGCCCCc--GGUu -3' miRNA: 3'- cCGCCu-CAGUUCCUA---UGGGGuaaCCG- -5' |
|||||||
9281 | 3' | -53.2 | NC_002512.2 | + | 105168 | 0.67 | 0.984407 |
Target: 5'- cGGCGGGGaacAGGugcacgcGCCCCAggacGGCg -3' miRNA: 3'- -CCGCCUCaguUCCua-----UGGGGUaa--CCG- -5' |
|||||||
9281 | 3' | -53.2 | NC_002512.2 | + | 32280 | 0.67 | 0.984407 |
Target: 5'- aGGCGGcccgCAugAGGAgggcgGCCUCGUagUGGCa -3' miRNA: 3'- -CCGCCuca-GU--UCCUa----UGGGGUA--ACCG- -5' |
|||||||
9281 | 3' | -53.2 | NC_002512.2 | + | 118389 | 0.67 | 0.978332 |
Target: 5'- cGGCGGAcGUCc-GGAcuCUCCGUcuacUGGCa -3' miRNA: 3'- -CCGCCU-CAGuuCCUauGGGGUA----ACCG- -5' |
|||||||
9281 | 3' | -53.2 | NC_002512.2 | + | 72905 | 0.68 | 0.975962 |
Target: 5'- cGGCGGccgaAGUUGcccAGGAUGCCgaCGUcGGCg -3' miRNA: 3'- -CCGCC----UCAGU---UCCUAUGGg-GUAaCCG- -5' |
|||||||
9281 | 3' | -53.2 | NC_002512.2 | + | 121227 | 0.68 | 0.964575 |
Target: 5'- cGGCGGGGaguaCAuguGGAccGCCCCGUgGGUc -3' miRNA: 3'- -CCGCCUCa---GUu--CCUa-UGGGGUAaCCG- -5' |
|||||||
9281 | 3' | -53.2 | NC_002512.2 | + | 104790 | 0.69 | 0.949858 |
Target: 5'- uGGCGGGGUCcgcgcgcggcGGGuuGUACUCCAg-GGCg -3' miRNA: 3'- -CCGCCUCAGu---------UCC--UAUGGGGUaaCCG- -5' |
|||||||
9281 | 3' | -53.2 | NC_002512.2 | + | 80824 | 0.7 | 0.936469 |
Target: 5'- -uCGGcGUCGGcGGAgggGCCCCGUaGGCg -3' miRNA: 3'- ccGCCuCAGUU-CCUa--UGGGGUAaCCG- -5' |
|||||||
9281 | 3' | -53.2 | NC_002512.2 | + | 33812 | 0.71 | 0.909522 |
Target: 5'- aGCGcGAG-CAGGGcgaagGCCCCggUGGCc -3' miRNA: 3'- cCGC-CUCaGUUCCua---UGGGGuaACCG- -5' |
|||||||
9281 | 3' | -53.2 | NC_002512.2 | + | 133646 | 0.67 | 0.980734 |
Target: 5'- uGGCGGAGUCcGGGGcggucGCCgCCGccgccgcggccgccgUGGCc -3' miRNA: 3'- -CCGCCUCAGuUCCUa----UGG-GGUa--------------ACCG- -5' |
|||||||
9281 | 3' | -53.2 | NC_002512.2 | + | 226852 | 0.71 | 0.890591 |
Target: 5'- aGGCGGAGcaggccgcCAGGGAgGCCCgGgaGGCc -3' miRNA: 3'- -CCGCCUCa-------GUUCCUaUGGGgUaaCCG- -5' |
|||||||
9281 | 3' | -53.2 | NC_002512.2 | + | 88135 | 0.68 | 0.975962 |
Target: 5'- cGGCGGAuGUaGGGGAcgauCCgCCcgUGGCc -3' miRNA: 3'- -CCGCCU-CAgUUCCUau--GG-GGuaACCG- -5' |
|||||||
9281 | 3' | -53.2 | NC_002512.2 | + | 167737 | 0.66 | 0.987672 |
Target: 5'- aGCGGGG-CGAGGAgcUGCCgggCGUcGGCg -3' miRNA: 3'- cCGCCUCaGUUCCU--AUGGg--GUAaCCG- -5' |
|||||||
9281 | 3' | -53.2 | NC_002512.2 | + | 143582 | 0.68 | 0.973408 |
Target: 5'- cGGCGGAG--AGGGAggcGCCCUugcGUgcgGGCc -3' miRNA: 3'- -CCGCCUCagUUCCUa--UGGGG---UAa--CCG- -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home