miRNA display CGI


Results 41 - 60 of 121 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9281 3' -53.2 NC_002512.2 + 180770 0.66 0.990381
Target:  5'- uGGCGuGcAGcCGGGcGAUGCCCCg--GGUg -3'
miRNA:   3'- -CCGC-C-UCaGUUC-CUAUGGGGuaaCCG- -5'
9281 3' -53.2 NC_002512.2 + 156520 0.66 0.991548
Target:  5'- cGGCGGGGcgCGGGGG---UCCGgcGGCg -3'
miRNA:   3'- -CCGCCUCa-GUUCCUaugGGGUaaCCG- -5'
9281 3' -53.2 NC_002512.2 + 160729 0.66 0.991548
Target:  5'- cGGgGGGGauuUCGGGGGgaacggcgccgGCCCCg--GGCa -3'
miRNA:   3'- -CCgCCUC---AGUUCCUa----------UGGGGuaaCCG- -5'
9281 3' -53.2 NC_002512.2 + 220987 0.66 0.991548
Target:  5'- uGGCcaggaGGGUCGAG--UGCCCCAacGGCu -3'
miRNA:   3'- -CCGc----CUCAGUUCcuAUGGGGUaaCCG- -5'
9281 3' -53.2 NC_002512.2 + 132104 0.66 0.992599
Target:  5'- cGGacCGGGGcUCGAGGGccGCCCgGUaGGCc -3'
miRNA:   3'- -CC--GCCUC-AGUUCCUa-UGGGgUAaCCG- -5'
9281 3' -53.2 NC_002512.2 + 167737 0.66 0.987672
Target:  5'- aGCGGGG-CGAGGAgcUGCCgggCGUcGGCg -3'
miRNA:   3'- cCGCCUCaGUUCCU--AUGGg--GUAaCCG- -5'
9281 3' -53.2 NC_002512.2 + 123855 0.66 0.987672
Target:  5'- uGGCGGAG---AGGAcgccgcacCCCCGgcGGCg -3'
miRNA:   3'- -CCGCCUCaguUCCUau------GGGGUaaCCG- -5'
9281 3' -53.2 NC_002512.2 + 177274 0.67 0.978332
Target:  5'- --gGGAGUcCAGGGAcuugGCCagGUUGGCg -3'
miRNA:   3'- ccgCCUCA-GUUCCUa---UGGggUAACCG- -5'
9281 3' -53.2 NC_002512.2 + 159359 0.67 0.980525
Target:  5'- cGGCgucGGGGUCGGGGcg-UCCCAUUcGCg -3'
miRNA:   3'- -CCG---CCUCAGUUCCuauGGGGUAAcCG- -5'
9281 3' -53.2 NC_002512.2 + 229524 0.67 0.980525
Target:  5'- cGGCGGAGaaAAGGAgaACgCCGgggagccgGGCg -3'
miRNA:   3'- -CCGCCUCagUUCCUa-UGgGGUaa------CCG- -5'
9281 3' -53.2 NC_002512.2 + 136390 0.67 0.982547
Target:  5'- cGGCcaGAG-CAAGGAgggaaccaACCCCAUcUGGUa -3'
miRNA:   3'- -CCGc-CUCaGUUCCUa-------UGGGGUA-ACCG- -5'
9281 3' -53.2 NC_002512.2 + 96626 0.67 0.982547
Target:  5'- cGGgGGAGggCGAGGAaACCgCGaccggGGCg -3'
miRNA:   3'- -CCgCCUCa-GUUCCUaUGGgGUaa---CCG- -5'
9281 3' -53.2 NC_002512.2 + 121434 0.67 0.98331
Target:  5'- cGCGGAGUCGgccccggagcccugaGGGGUccGCCCCGc--GCc -3'
miRNA:   3'- cCGCCUCAGU---------------UCCUA--UGGGGUaacCG- -5'
9281 3' -53.2 NC_002512.2 + 87516 0.67 0.984407
Target:  5'- cGCGGAGcCGAuggcGGGUAUCuCCGUUcucGGCu -3'
miRNA:   3'- cCGCCUCaGUU----CCUAUGG-GGUAA---CCG- -5'
9281 3' -53.2 NC_002512.2 + 201082 0.67 0.985449
Target:  5'- uGCGGGGUCuGGGAcagcaUGCCCacgaagaugaGGCa -3'
miRNA:   3'- cCGCCUCAGuUCCU-----AUGGGguaa------CCG- -5'
9281 3' -53.2 NC_002512.2 + 127659 0.67 0.986113
Target:  5'- cGGaCGGccGGUCGAGGGccGCUCCGgccgcGGCg -3'
miRNA:   3'- -CC-GCC--UCAGUUCCUa-UGGGGUaa---CCG- -5'
9281 3' -53.2 NC_002512.2 + 181999 0.67 0.986113
Target:  5'- uGGCGGAcGUCcucGGGGUcagGCCCa---GGCg -3'
miRNA:   3'- -CCGCCU-CAGu--UCCUA---UGGGguaaCCG- -5'
9281 3' -53.2 NC_002512.2 + 187268 0.67 0.986113
Target:  5'- uGGCGGAcGUCGccucgaaGUGCCCCcg-GGCu -3'
miRNA:   3'- -CCGCCU-CAGUucc----UAUGGGGuaaCCG- -5'
9281 3' -53.2 NC_002512.2 + 185515 0.66 0.987371
Target:  5'- cGCGGGGgccugccgcucuUCGAGGGgguggccuaccgGCCCCGcggcgUGGCc -3'
miRNA:   3'- cCGCCUC------------AGUUCCUa-----------UGGGGUa----ACCG- -5'
9281 3' -53.2 NC_002512.2 + 108437 0.66 0.987672
Target:  5'- gGGCcgGGGGcCGGGGGgucccuCCCCGggcGGCg -3'
miRNA:   3'- -CCG--CCUCaGUUCCUau----GGGGUaa-CCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.