miRNA display CGI


Results 1 - 20 of 69 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9320 3' -57.6 NC_002512.2 + 227017 0.73 0.54702
Target:  5'- cCGgGGACgAGUUCGGUCuGCccaAGCUCg -3'
miRNA:   3'- aGCgCCUGgUCGAGCUAGuCG---UCGAG- -5'
9320 3' -57.6 NC_002512.2 + 226320 0.66 0.890336
Target:  5'- cUGUGGGCCguGGCUCGGgaCGGCAGacggaUCu -3'
miRNA:   3'- aGCGCCUGG--UCGAGCUa-GUCGUCg----AG- -5'
9320 3' -57.6 NC_002512.2 + 225106 0.71 0.685218
Target:  5'- gUCGCaaccGGCgCAGCUCGAggcgCAGCAGUUg -3'
miRNA:   3'- -AGCGc---CUG-GUCGAGCUa---GUCGUCGAg -5'
9320 3' -57.6 NC_002512.2 + 222420 0.66 0.902999
Target:  5'- gCGgGGGCCGGCagcCGcgCcGCGGCUUc -3'
miRNA:   3'- aGCgCCUGGUCGa--GCuaGuCGUCGAG- -5'
9320 3' -57.6 NC_002512.2 + 221685 0.66 0.897408
Target:  5'- aCGCGGACacccgcccggcgacGCUCGGccUCGGguGCUa -3'
miRNA:   3'- aGCGCCUGgu------------CGAGCU--AGUCguCGAg -5'
9320 3' -57.6 NC_002512.2 + 221562 0.66 0.896776
Target:  5'- cCGCGGucuCCGGCUCc--CGGCccuGCUCc -3'
miRNA:   3'- aGCGCCu--GGUCGAGcuaGUCGu--CGAG- -5'
9320 3' -57.6 NC_002512.2 + 217788 0.67 0.883682
Target:  5'- gUCGCGG-CCGGCUggcgGAUCGGCGucGC-Cg -3'
miRNA:   3'- -AGCGCCuGGUCGAg---CUAGUCGU--CGaG- -5'
9320 3' -57.6 NC_002512.2 + 217141 0.71 0.685218
Target:  5'- -aGCGGGcCCAGCUUGcgCcGCAGgCUCu -3'
miRNA:   3'- agCGCCU-GGUCGAGCuaGuCGUC-GAG- -5'
9320 3' -57.6 NC_002512.2 + 216325 0.72 0.57631
Target:  5'- cUGCGGcCCcGacgCGGUCGGCGGCUCg -3'
miRNA:   3'- aGCGCCuGGuCga-GCUAGUCGUCGAG- -5'
9320 3' -57.6 NC_002512.2 + 213076 0.71 0.655583
Target:  5'- cCGCGGGCUAcguGCUCuucGUCGGCGGCg- -3'
miRNA:   3'- aGCGCCUGGU---CGAGc--UAGUCGUCGag -5'
9320 3' -57.6 NC_002512.2 + 209436 0.66 0.902386
Target:  5'- gCGCGGaugaccgucaucgGCCGGCU-GAUCuuCGGCUCc -3'
miRNA:   3'- aGCGCC-------------UGGUCGAgCUAGucGUCGAG- -5'
9320 3' -57.6 NC_002512.2 + 205057 0.71 0.655583
Target:  5'- cCGCGGGCCcggaccuacuGGCUgGAgagCGGCGGCg- -3'
miRNA:   3'- aGCGCCUGG----------UCGAgCUa--GUCGUCGag -5'
9320 3' -57.6 NC_002512.2 + 204641 0.67 0.860257
Target:  5'- aCGgGGACCGGgaCGGcgacgcgcgggggaUCgccGGCGGCUCg -3'
miRNA:   3'- aGCgCCUGGUCgaGCU--------------AG---UCGUCGAG- -5'
9320 3' -57.6 NC_002512.2 + 203877 0.67 0.876818
Target:  5'- gUCGCGGACggaAGCUCuccaagGAgacgCAGCuGUUCa -3'
miRNA:   3'- -AGCGCCUGg--UCGAG------CUa---GUCGuCGAG- -5'
9320 3' -57.6 NC_002512.2 + 203522 0.71 0.645659
Target:  5'- cCGCcGACCAGCaCGAUCAGgaAGUUCa -3'
miRNA:   3'- aGCGcCUGGUCGaGCUAGUCg-UCGAG- -5'
9320 3' -57.6 NC_002512.2 + 202467 0.7 0.714479
Target:  5'- cCGCGGACgcucggcgaCGGCggCGAucugccgacUCAGCAGUUCg -3'
miRNA:   3'- aGCGCCUG---------GUCGa-GCU---------AGUCGUCGAG- -5'
9320 3' -57.6 NC_002512.2 + 201994 0.67 0.869748
Target:  5'- aCGCGGugUGGCUCGucUCGGaCAGgUg -3'
miRNA:   3'- aGCGCCugGUCGAGCu-AGUC-GUCgAg -5'
9320 3' -57.6 NC_002512.2 + 198155 0.69 0.788979
Target:  5'- gCGCGGGCCGGgUCGGcgcCGGcCGGCg- -3'
miRNA:   3'- aGCGCCUGGUCgAGCUa--GUC-GUCGag -5'
9320 3' -57.6 NC_002512.2 + 196030 0.66 0.909001
Target:  5'- -gGgGGACCGGCUCGccaacaugacCGGCAuGUUCa -3'
miRNA:   3'- agCgCCUGGUCGAGCua--------GUCGU-CGAG- -5'
9320 3' -57.6 NC_002512.2 + 195294 0.69 0.752529
Target:  5'- gCGgGGGCCGGCgcCGAagGGCgcgAGCUCa -3'
miRNA:   3'- aGCgCCUGGUCGa-GCUagUCG---UCGAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.