miRNA display CGI


Results 1 - 20 of 73 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9320 5' -64.7 NC_002512.2 + 225817 0.66 0.633241
Target:  5'- gGGUGgCCUGGgaccUCGAGCCgCGGGggaUCGa -3'
miRNA:   3'- aCCGCgGGGCC----AGCUCGGgGCUC---AGC- -5'
9320 5' -64.7 NC_002512.2 + 225788 0.69 0.487515
Target:  5'- aGGCuGCgCCGGcCGGGCCgCGGG-CGg -3'
miRNA:   3'- aCCG-CGgGGCCaGCUCGGgGCUCaGC- -5'
9320 5' -64.7 NC_002512.2 + 223992 0.69 0.49624
Target:  5'- cGcGCGCCCCGccGUccaCGAGCgaCGAGUCGg -3'
miRNA:   3'- aC-CGCGGGGC--CA---GCUCGggGCUCAGC- -5'
9320 5' -64.7 NC_002512.2 + 223302 0.68 0.505035
Target:  5'- aUGGUGCCgCCGGUCGAca-CCGugaacGGUCGg -3'
miRNA:   3'- -ACCGCGG-GGCCAGCUcggGGC-----UCAGC- -5'
9320 5' -64.7 NC_002512.2 + 223211 0.69 0.487515
Target:  5'- cGGCGUCCCGGagCGcGUCCCG-GcCGg -3'
miRNA:   3'- aCCGCGGGGCCa-GCuCGGGGCuCaGC- -5'
9320 5' -64.7 NC_002512.2 + 223057 0.72 0.338254
Target:  5'- aGGUGCCCCuGGUcgccaccguggcCGAGaCCCGGGUCc -3'
miRNA:   3'- aCCGCGGGG-CCA------------GCUCgGGGCUCAGc -5'
9320 5' -64.7 NC_002512.2 + 219467 0.68 0.513896
Target:  5'- cGGCGacgaCgCGGUCGuGCCCCuggggcGGGUCa -3'
miRNA:   3'- aCCGCg---GgGCCAGCuCGGGG------CUCAGc -5'
9320 5' -64.7 NC_002512.2 + 216733 0.68 0.505035
Target:  5'- aUGGCGCgCaGGUccgCGAGCgCCCG-GUCGa -3'
miRNA:   3'- -ACCGCGgGgCCA---GCUCG-GGGCuCAGC- -5'
9320 5' -64.7 NC_002512.2 + 213194 0.66 0.6612
Target:  5'- cGGCuaccgccacaCCCUGGUCuGGGaCCgCCGGGUCGu -3'
miRNA:   3'- aCCGc---------GGGGCCAG-CUC-GG-GGCUCAGC- -5'
9320 5' -64.7 NC_002512.2 + 212938 0.71 0.362407
Target:  5'- gGGCGgCCCGGUcCGAGUcgcccuacggcgccuCCgGGGUCGa -3'
miRNA:   3'- aCCGCgGGGCCA-GCUCG---------------GGgCUCAGC- -5'
9320 5' -64.7 NC_002512.2 + 211880 0.68 0.529101
Target:  5'- cGGCGCCCUGGagCGGGUCaccuuccggggcugCCGcGUCGu -3'
miRNA:   3'- aCCGCGGGGCCa-GCUCGG--------------GGCuCAGC- -5'
9320 5' -64.7 NC_002512.2 + 208424 0.71 0.366792
Target:  5'- gGGCGCcgcuCCCGG-CGccGGCCCCcgaucGAGUCGg -3'
miRNA:   3'- aCCGCG----GGGCCaGC--UCGGGG-----CUCAGC- -5'
9320 5' -64.7 NC_002512.2 + 199886 0.67 0.614588
Target:  5'- cGGCucGCCCUGGucUCGAGaccgCCCGuGUCu -3'
miRNA:   3'- aCCG--CGGGGCC--AGCUCg---GGGCuCAGc -5'
9320 5' -64.7 NC_002512.2 + 199242 0.67 0.614588
Target:  5'- cGGCGCagCCCGauGUCGAGUCuCUGGauGUCGg -3'
miRNA:   3'- aCCGCG--GGGC--CAGCUCGG-GGCU--CAGC- -5'
9320 5' -64.7 NC_002512.2 + 198563 0.66 0.64257
Target:  5'- gGGCGCUguCCaGGUCGuacauCCUCGAGUUGa -3'
miRNA:   3'- aCCGCGG--GG-CCAGCuc---GGGGCUCAGC- -5'
9320 5' -64.7 NC_002512.2 + 198121 0.67 0.595978
Target:  5'- uUGGC-CCCCuugaGGUuggcgaagcgCGAGCCCCGcgcgggccgGGUCGg -3'
miRNA:   3'- -ACCGcGGGG----CCA----------GCUCGGGGC---------UCAGC- -5'
9320 5' -64.7 NC_002512.2 + 195351 0.68 0.538123
Target:  5'- cGGCGCCgggaaccccgggugCUGGUCGGcuGCCuggucaccugCCGGGUCGa -3'
miRNA:   3'- aCCGCGG--------------GGCCAGCU--CGG----------GGCUCAGC- -5'
9320 5' -64.7 NC_002512.2 + 188784 0.69 0.453377
Target:  5'- cGGCgGCUCCGGccUCGgcGGCCCCGA-UCGc -3'
miRNA:   3'- aCCG-CGGGGCC--AGC--UCGGGGCUcAGC- -5'
9320 5' -64.7 NC_002512.2 + 186827 0.71 0.352318
Target:  5'- cGGUGCCUCGG-CGAgGCCCUGcgcGUCGc -3'
miRNA:   3'- aCCGCGGGGCCaGCU-CGGGGCu--CAGC- -5'
9320 5' -64.7 NC_002512.2 + 186089 0.72 0.344532
Target:  5'- cGGCGagaCCGGUCGgcuccugcugugcGGCCCCGAGcUCu -3'
miRNA:   3'- aCCGCgg-GGCCAGC-------------UCGGGGCUC-AGc -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.