miRNA display CGI


Results 1 - 20 of 121 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9335 3' -62.1 NC_002512.2 + 227661 0.66 0.796383
Target:  5'- gUCCGgaGgaaGAGcGGCGGCGCCGcCg -3'
miRNA:   3'- gAGGCggCag-CUC-CUGCCGCGGCaGa -5'
9335 3' -62.1 NC_002512.2 + 227058 0.66 0.787986
Target:  5'- -cCCGCCGUCGuccGGGCccgcgcccGCGCCGg-- -3'
miRNA:   3'- gaGGCGGCAGCu--CCUGc-------CGCGGCaga -5'
9335 3' -62.1 NC_002512.2 + 226530 0.67 0.723508
Target:  5'- -gCCGCCGUCcucgaucggaggaaGAGGAaGGCGUCGg-- -3'
miRNA:   3'- gaGGCGGCAG--------------CUCCUgCCGCGGCaga -5'
9335 3' -62.1 NC_002512.2 + 226201 0.66 0.762103
Target:  5'- -aCCuCCGUCGGGGACGGgaggaccucCGgaCCGUCg -3'
miRNA:   3'- gaGGcGGCAGCUCCUGCC---------GC--GGCAGa -5'
9335 3' -62.1 NC_002512.2 + 225385 0.71 0.502826
Target:  5'- cCUCgCGUCcauccucuUCGGGGACGGCGCCGg-- -3'
miRNA:   3'- -GAG-GCGGc-------AGCUCCUGCCGCGGCaga -5'
9335 3' -62.1 NC_002512.2 + 225264 0.7 0.56685
Target:  5'- uCUCCGCCag-GAGGGCguccucGGCGuCCGUCUc -3'
miRNA:   3'- -GAGGCGGcagCUCCUG------CCGC-GGCAGA- -5'
9335 3' -62.1 NC_002512.2 + 224961 0.72 0.417445
Target:  5'- gCUCCGCCGUCuacccgcuGGGCGGCGgCGg-- -3'
miRNA:   3'- -GAGGCGGCAGcu------CCUGCCGCgGCaga -5'
9335 3' -62.1 NC_002512.2 + 224922 0.67 0.726248
Target:  5'- cCUCCGUCG-CGGGGAccggguccgugcCGGUGUCGcUCg -3'
miRNA:   3'- -GAGGCGGCaGCUCCU------------GCCGCGGC-AGa -5'
9335 3' -62.1 NC_002512.2 + 223815 0.7 0.56685
Target:  5'- -aCCGCCGggaCGAcGACGGCG-CGUCg -3'
miRNA:   3'- gaGGCGGCa--GCUcCUGCCGCgGCAGa -5'
9335 3' -62.1 NC_002512.2 + 223263 0.67 0.698603
Target:  5'- gUCCGCguCGUCgGGGGGCGGgaCGCCG-Cg -3'
miRNA:   3'- gAGGCG--GCAG-CUCCUGCC--GCGGCaGa -5'
9335 3' -62.1 NC_002512.2 + 223196 0.69 0.613836
Target:  5'- -gCCGcCCGaCGGGGACGGCGUcccggagcgCGUCc -3'
miRNA:   3'- gaGGC-GGCaGCUCCUGCCGCG---------GCAGa -5'
9335 3' -62.1 NC_002512.2 + 222646 0.67 0.698603
Target:  5'- gCUCCGCCG-CGAcGGcCGGCcggGCCGa-- -3'
miRNA:   3'- -GAGGCGGCaGCU-CCuGCCG---CGGCaga -5'
9335 3' -62.1 NC_002512.2 + 222583 0.67 0.717093
Target:  5'- -cCCGCCGUCGcGGAggaGGC-CUGUCc -3'
miRNA:   3'- gaGGCGGCAGCuCCUg--CCGcGGCAGa -5'
9335 3' -62.1 NC_002512.2 + 222533 0.66 0.744343
Target:  5'- -gCCGCCGUCGcGGugggccgggcuACGGCGacccgaCCGUCc -3'
miRNA:   3'- gaGGCGGCAGCuCC-----------UGCCGC------GGCAGa -5'
9335 3' -62.1 NC_002512.2 + 221753 0.68 0.679923
Target:  5'- --gCGCCGUCGAacggcagcuGGGCGGCcGUCGUg- -3'
miRNA:   3'- gagGCGGCAGCU---------CCUGCCG-CGGCAga -5'
9335 3' -62.1 NC_002512.2 + 221152 0.69 0.613836
Target:  5'- -cCCGUCGUCGAcGGGCGGgCGCgCG-Cg -3'
miRNA:   3'- gaGGCGGCAGCU-CCUGCC-GCG-GCaGa -5'
9335 3' -62.1 NC_002512.2 + 220539 0.71 0.493925
Target:  5'- -gCUGCUGcgCGAGGGCGucaCGCCGUCUa -3'
miRNA:   3'- gaGGCGGCa-GCUCCUGCc--GCGGCAGA- -5'
9335 3' -62.1 NC_002512.2 + 220378 0.72 0.409397
Target:  5'- -gCCGCCGUgcUGGGGcCGGCcGUCGUCUa -3'
miRNA:   3'- gaGGCGGCA--GCUCCuGCCG-CGGCAGA- -5'
9335 3' -62.1 NC_002512.2 + 219163 0.67 0.735334
Target:  5'- cCUCCGCC---GAGGACuucGcCGCCGUCg -3'
miRNA:   3'- -GAGGCGGcagCUCCUGc--C-GCGGCAGa -5'
9335 3' -62.1 NC_002512.2 + 217596 0.67 0.735334
Target:  5'- -gCCGCCucgggggucGUCGGcgacucGGGCGGCGCCacggGUCUc -3'
miRNA:   3'- gaGGCGG---------CAGCU------CCUGCCGCGG----CAGA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.