Results 41 - 60 of 74 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
9335 | 5' | -56.9 | NC_002512.2 | + | 157799 | 0.69 | 0.830047 |
Target: 5'- cCGGGCGGUGuGCaGGUCgcugCGGgGGCc -3' miRNA: 3'- aGUCCGCCGC-CGaCCAGaa--GCUgUUG- -5' |
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9335 | 5' | -56.9 | NC_002512.2 | + | 189058 | 0.69 | 0.830047 |
Target: 5'- cUCGGaGCGGcCGGC-GGcgCUcUCGACGGCg -3' miRNA: 3'- -AGUC-CGCC-GCCGaCCa-GA-AGCUGUUG- -5' |
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9335 | 5' | -56.9 | NC_002512.2 | + | 197847 | 0.69 | 0.830047 |
Target: 5'- -gGGGCGGCGGgaGGcccUCUUcaacCGACuGCg -3' miRNA: 3'- agUCCGCCGCCgaCC---AGAA----GCUGuUG- -5' |
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9335 | 5' | -56.9 | NC_002512.2 | + | 94092 | 0.69 | 0.821821 |
Target: 5'- --cGGCGGCGGCcGGUC--CGACu-- -3' miRNA: 3'- aguCCGCCGCCGaCCAGaaGCUGuug -5' |
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9335 | 5' | -56.9 | NC_002512.2 | + | 92730 | 0.69 | 0.813433 |
Target: 5'- cCGGGgGGCGcGCUcGGUCcgauggcgcCGACGACg -3' miRNA: 3'- aGUCCgCCGC-CGA-CCAGaa-------GCUGUUG- -5' |
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9335 | 5' | -56.9 | NC_002512.2 | + | 76109 | 0.69 | 0.813433 |
Target: 5'- -gAGGCGGgGGCgccggGGUggugUCGAUGACg -3' miRNA: 3'- agUCCGCCgCCGa----CCAga--AGCUGUUG- -5' |
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9335 | 5' | -56.9 | NC_002512.2 | + | 133079 | 0.69 | 0.804889 |
Target: 5'- gCAGGCGGUGGgUccGGUUggCGcGCAGCg -3' miRNA: 3'- aGUCCGCCGCCgA--CCAGaaGC-UGUUG- -5' |
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9335 | 5' | -56.9 | NC_002512.2 | + | 146116 | 0.69 | 0.804889 |
Target: 5'- --cGGCGGCGGCgccGUCUUCuGCAc- -3' miRNA: 3'- aguCCGCCGCCGac-CAGAAGcUGUug -5' |
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9335 | 5' | -56.9 | NC_002512.2 | + | 169540 | 0.69 | 0.796198 |
Target: 5'- aCGGGUcccggcugcccGGCGGCgUGGcCUUCGcCGGCg -3' miRNA: 3'- aGUCCG-----------CCGCCG-ACCaGAAGCuGUUG- -5' |
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9335 | 5' | -56.9 | NC_002512.2 | + | 205717 | 0.69 | 0.796198 |
Target: 5'- aCAGGCGGCGGCacaaGUCggggUCGGgGGg -3' miRNA: 3'- aGUCCGCCGCCGac--CAGa---AGCUgUUg -5' |
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9335 | 5' | -56.9 | NC_002512.2 | + | 127818 | 0.69 | 0.796198 |
Target: 5'- cUCGGGUcccGGCuccGGgaGGUCgUCGGCGGCg -3' miRNA: 3'- -AGUCCG---CCG---CCgaCCAGaAGCUGUUG- -5' |
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9335 | 5' | -56.9 | NC_002512.2 | + | 196422 | 0.69 | 0.787367 |
Target: 5'- -gGGGCGGCGGCcgGGUCgggagaggUCGGgGc- -3' miRNA: 3'- agUCCGCCGCCGa-CCAGa-------AGCUgUug -5' |
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9335 | 5' | -56.9 | NC_002512.2 | + | 74401 | 0.69 | 0.787367 |
Target: 5'- -gAGaGCGGCGGCcaUGGccgucucuUCUUCGAcCGACg -3' miRNA: 3'- agUC-CGCCGCCG--ACC--------AGAAGCU-GUUG- -5' |
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9335 | 5' | -56.9 | NC_002512.2 | + | 173633 | 0.7 | 0.778404 |
Target: 5'- ---cGCGGCGGCgaaccccgGGUCgggggCGGCGGCa -3' miRNA: 3'- agucCGCCGCCGa-------CCAGaa---GCUGUUG- -5' |
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9335 | 5' | -56.9 | NC_002512.2 | + | 217586 | 0.7 | 0.769317 |
Target: 5'- gUCcGGCGGCGccGCcucgggGGUCgUCGGCGACu -3' miRNA: 3'- -AGuCCGCCGC--CGa-----CCAGaAGCUGUUG- -5' |
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9335 | 5' | -56.9 | NC_002512.2 | + | 202525 | 0.7 | 0.750806 |
Target: 5'- -gAGGCGGCGGCgGGggcg-GACGACc -3' miRNA: 3'- agUCCGCCGCCGaCCagaagCUGUUG- -5' |
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9335 | 5' | -56.9 | NC_002512.2 | + | 157163 | 0.7 | 0.750806 |
Target: 5'- gCGGGCcgGGCGGCgUGGg---CGGCGGCg -3' miRNA: 3'- aGUCCG--CCGCCG-ACCagaaGCUGUUG- -5' |
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9335 | 5' | -56.9 | NC_002512.2 | + | 75284 | 0.71 | 0.7319 |
Target: 5'- --cGGCGGCGGC-GG-CggCGACGAUg -3' miRNA: 3'- aguCCGCCGCCGaCCaGaaGCUGUUG- -5' |
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9335 | 5' | -56.9 | NC_002512.2 | + | 225534 | 0.71 | 0.712668 |
Target: 5'- aCGGGaCGGCGGgaGcGcggaggacgacuUCUUCGGCGACg -3' miRNA: 3'- aGUCC-GCCGCCgaC-C------------AGAAGCUGUUG- -5' |
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9335 | 5' | -56.9 | NC_002512.2 | + | 180279 | 0.71 | 0.693178 |
Target: 5'- cUCAuGGCGGCGGCguucccGUCgcccUCGACAGg -3' miRNA: 3'- -AGU-CCGCCGCCGac----CAGa---AGCUGUUg -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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