miRNA display CGI


Results 21 - 40 of 62 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9337 3' -48.9 NC_002512.2 + 216809 0.67 0.999521
Target:  5'- uGACGAUGGCGUcgcgggucggGUACgGCuGCGUCUc -3'
miRNA:   3'- cUUGCUGUCGCA----------CAUGaCGuUGUAGG- -5'
9337 3' -48.9 NC_002512.2 + 126778 0.67 0.999521
Target:  5'- cGGCGGCGGCGacgcGUGCcGCGccCGUCCc -3'
miRNA:   3'- cUUGCUGUCGCa---CAUGaCGUu-GUAGG- -5'
9337 3' -48.9 NC_002512.2 + 93969 0.67 0.999521
Target:  5'- --cCGACucaGGaCGUGUcGCUGCG-CGUCCg -3'
miRNA:   3'- cuuGCUG---UC-GCACA-UGACGUuGUAGG- -5'
9337 3' -48.9 NC_002512.2 + 169555 0.67 0.999407
Target:  5'- --cCGGCGGCGUGgccuucGCcgGCGucuccGCGUCCg -3'
miRNA:   3'- cuuGCUGUCGCACa-----UGa-CGU-----UGUAGG- -5'
9337 3' -48.9 NC_002512.2 + 193070 0.67 0.999269
Target:  5'- cAACGGCA-CGgagaUGUGCUGCGGCGagugCCg -3'
miRNA:   3'- cUUGCUGUcGC----ACAUGACGUUGUa---GG- -5'
9337 3' -48.9 NC_002512.2 + 184306 0.68 0.99891
Target:  5'- uAACGuCaugAGCGUGgccaGCUGCGACGUgCg -3'
miRNA:   3'- cUUGCuG---UCGCACa---UGACGUUGUAgG- -5'
9337 3' -48.9 NC_002512.2 + 171449 0.68 0.998681
Target:  5'- cGAACGcCuGCGgaguCUGCAgcGCGUCCg -3'
miRNA:   3'- -CUUGCuGuCGCacauGACGU--UGUAGG- -5'
9337 3' -48.9 NC_002512.2 + 146296 0.68 0.998681
Target:  5'- cGGCGACugcuucgacaccGGCGUGUACgGCcACggCCg -3'
miRNA:   3'- cUUGCUG------------UCGCACAUGaCGuUGuaGG- -5'
9337 3' -48.9 NC_002512.2 + 148783 0.68 0.998411
Target:  5'- uGGGCGuCAGCGacucGUaccGCUGCGGCA-CCg -3'
miRNA:   3'- -CUUGCuGUCGCa---CA---UGACGUUGUaGG- -5'
9337 3' -48.9 NC_002512.2 + 181587 0.68 0.998411
Target:  5'- cGGCGGCAGgGgcgGCggguccGCGACGUCCu -3'
miRNA:   3'- cUUGCUGUCgCacaUGa-----CGUUGUAGG- -5'
9337 3' -48.9 NC_002512.2 + 217850 0.69 0.997483
Target:  5'- aGGCGGCAGCG-GU-CUGCccggcguggggagcGCGUCCg -3'
miRNA:   3'- cUUGCUGUCGCaCAuGACGu-------------UGUAGG- -5'
9337 3' -48.9 NC_002512.2 + 110491 0.69 0.997307
Target:  5'- cAGCGGCAcGCGgcc-CUGCAGCAgggCCg -3'
miRNA:   3'- cUUGCUGU-CGCacauGACGUUGUa--GG- -5'
9337 3' -48.9 NC_002512.2 + 170822 0.69 0.996821
Target:  5'- gGGGCGGCAGCGgcgGCaGCGGCGgcgacCCg -3'
miRNA:   3'- -CUUGCUGUCGCacaUGaCGUUGUa----GG- -5'
9337 3' -48.9 NC_002512.2 + 196583 0.69 0.996821
Target:  5'- ---gGACGGCGUGUccgucaUGCucauGACGUCCg -3'
miRNA:   3'- cuugCUGUCGCACAug----ACG----UUGUAGG- -5'
9337 3' -48.9 NC_002512.2 + 186306 0.69 0.996264
Target:  5'- -cGCGACGcCGUGgucauCgGCAACGUCCu -3'
miRNA:   3'- cuUGCUGUcGCACau---GaCGUUGUAGG- -5'
9337 3' -48.9 NC_002512.2 + 154726 0.69 0.995629
Target:  5'- gGAACGGCGuuGCGUccGCgGCcGCGUCCg -3'
miRNA:   3'- -CUUGCUGU--CGCAcaUGaCGuUGUAGG- -5'
9337 3' -48.9 NC_002512.2 + 138183 0.69 0.995629
Target:  5'- ---gGGCuGCGUGUGCaucGCgGACAUCCu -3'
miRNA:   3'- cuugCUGuCGCACAUGa--CG-UUGUAGG- -5'
9337 3' -48.9 NC_002512.2 + 88689 0.69 0.99491
Target:  5'- --cCGGCuGCGc-UGCUGCAugAUCCg -3'
miRNA:   3'- cuuGCUGuCGCacAUGACGUugUAGG- -5'
9337 3' -48.9 NC_002512.2 + 146715 0.7 0.994097
Target:  5'- aGACGACGGCGgggcgGcgGCcGCGGCcgCCg -3'
miRNA:   3'- cUUGCUGUCGCa----Ca-UGaCGUUGuaGG- -5'
9337 3' -48.9 NC_002512.2 + 124322 0.7 0.994097
Target:  5'- gGGGCcGCGGCGgacGUGCUGCGGCuguaCCu -3'
miRNA:   3'- -CUUGcUGUCGCa--CAUGACGUUGua--GG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.