miRNA display CGI


Results 1 - 20 of 29 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9349 5' -55.7 NC_002512.2 + 155016 0.66 0.971107
Target:  5'- cCCGUCGuccCGGGUgCGGUuccGGAGCGGa -3'
miRNA:   3'- aGGUAGCu--GUCCA-GCCAcc-CCUUGUC- -5'
9349 5' -55.7 NC_002512.2 + 221076 0.66 0.968252
Target:  5'- cUCCggCGGCGGaaCGGcgUGGGGGACGc -3'
miRNA:   3'- -AGGuaGCUGUCcaGCC--ACCCCUUGUc -5'
9349 5' -55.7 NC_002512.2 + 176010 0.66 0.968252
Target:  5'- gUCCGUCu---GGUCccUGGGGAACGGa -3'
miRNA:   3'- -AGGUAGcuguCCAGccACCCCUUGUC- -5'
9349 5' -55.7 NC_002512.2 + 153036 0.66 0.96195
Target:  5'- gUCCc-CGGuCGGGUCGGc-GGGAGCGGu -3'
miRNA:   3'- -AGGuaGCU-GUCCAGCCacCCCUUGUC- -5'
9349 5' -55.7 NC_002512.2 + 153011 0.66 0.96195
Target:  5'- gUCCc-CGGuCGGGUCGGc-GGGAGCGGu -3'
miRNA:   3'- -AGGuaGCU-GUCCAGCCacCCCUUGUC- -5'
9349 5' -55.7 NC_002512.2 + 152986 0.66 0.96195
Target:  5'- gUCCc-CGGuCGGGUCGGc-GGGAGCGGu -3'
miRNA:   3'- -AGGuaGCU-GUCCAGCCacCCCUUGUC- -5'
9349 5' -55.7 NC_002512.2 + 152961 0.66 0.96195
Target:  5'- gUCCc-CGGuCGGGUCGGc-GGGAGCGGu -3'
miRNA:   3'- -AGGuaGCU-GUCCAGCCacCCCUUGUC- -5'
9349 5' -55.7 NC_002512.2 + 87781 0.66 0.96195
Target:  5'- gCCGcCGACGGGUCGGUaccGGGuccGCGu -3'
miRNA:   3'- aGGUaGCUGUCCAGCCAc--CCCu--UGUc -5'
9349 5' -55.7 NC_002512.2 + 219835 0.66 0.958494
Target:  5'- gUCgGUCGGgGGGUcCGGcccGGGGGCGGa -3'
miRNA:   3'- -AGgUAGCUgUCCA-GCCac-CCCUUGUC- -5'
9349 5' -55.7 NC_002512.2 + 175592 0.66 0.954829
Target:  5'- -aCGUCGccguGCGGGUCcuucgGGUGGGGugcCAGg -3'
miRNA:   3'- agGUAGC----UGUCCAG-----CCACCCCuu-GUC- -5'
9349 5' -55.7 NC_002512.2 + 191278 0.67 0.933248
Target:  5'- -gCggCGACGGGgagggcggCGGggcGGGGGACGGg -3'
miRNA:   3'- agGuaGCUGUCCa-------GCCa--CCCCUUGUC- -5'
9349 5' -55.7 NC_002512.2 + 115256 0.68 0.928265
Target:  5'- aCCuacaCGAUAGG-CGGcGGGGAGCGc -3'
miRNA:   3'- aGGua--GCUGUCCaGCCaCCCCUUGUc -5'
9349 5' -55.7 NC_002512.2 + 150047 0.68 0.923059
Target:  5'- gCCGgggaCGACGGGgCGGgaggGGGGGACc- -3'
miRNA:   3'- aGGUa---GCUGUCCaGCCa---CCCCUUGuc -5'
9349 5' -55.7 NC_002512.2 + 132453 0.68 0.911973
Target:  5'- cCCggCGGCGGGUCc--GGGGAGCGc -3'
miRNA:   3'- aGGuaGCUGUCCAGccaCCCCUUGUc -5'
9349 5' -55.7 NC_002512.2 + 90517 0.68 0.911395
Target:  5'- gCCGgcggcggaCGACGGGaacgCGGUGGGGGaggaggaGCGGg -3'
miRNA:   3'- aGGUa-------GCUGUCCa---GCCACCCCU-------UGUC- -5'
9349 5' -55.7 NC_002512.2 + 207716 0.68 0.899377
Target:  5'- gCCAUCGcCAGcgccgaguccaucGUCGGcGGGGGACGc -3'
miRNA:   3'- aGGUAGCuGUC-------------CAGCCaCCCCUUGUc -5'
9349 5' -55.7 NC_002512.2 + 221299 0.69 0.887154
Target:  5'- -----aGGCcgGGGUCGGcGGGGAGCGGg -3'
miRNA:   3'- agguagCUG--UCCAGCCaCCCCUUGUC- -5'
9349 5' -55.7 NC_002512.2 + 160663 0.69 0.880412
Target:  5'- aCCGcggCGACGGGgauUCGG-GGGGGACu- -3'
miRNA:   3'- aGGUa--GCUGUCC---AGCCaCCCCUUGuc -5'
9349 5' -55.7 NC_002512.2 + 168132 0.69 0.873464
Target:  5'- cCCGgccgCGGCgAGGggcugggGGUGGGGGGCGGa -3'
miRNA:   3'- aGGUa---GCUG-UCCag-----CCACCCCUUGUC- -5'
9349 5' -55.7 NC_002512.2 + 209874 0.69 0.866312
Target:  5'- -aCGcCGGCuacuacguGGUCGGUcgcGGGGAGCAGg -3'
miRNA:   3'- agGUaGCUGu-------CCAGCCA---CCCCUUGUC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.