miRNA display CGI


Results 1 - 20 of 48 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9350 5' -59.3 NC_002512.2 + 225253 0.67 0.841902
Target:  5'- cCCGUGCuccuucuccgccaggAGgGCGucCUCGGCGUCCg -3'
miRNA:   3'- cGGCACG---------------UCgCGCcaGAGCUGCAGGa -5'
9350 5' -59.3 NC_002512.2 + 221473 0.75 0.395536
Target:  5'- gGCCGcGguGCGCGuuccuggcgCUCGGCGUCCUa -3'
miRNA:   3'- -CGGCaCguCGCGCca-------GAGCUGCAGGA- -5'
9350 5' -59.3 NC_002512.2 + 218223 0.66 0.871143
Target:  5'- gGCCGcgGCGGgcCGCGGcgCcgauauauguccgggUCGGCGUCCUc -3'
miRNA:   3'- -CGGCa-CGUC--GCGCCa-G---------------AGCUGCAGGA- -5'
9350 5' -59.3 NC_002512.2 + 212833 0.67 0.814896
Target:  5'- cGCCGggGUugGGCGCGGg--CGcCGUCCg -3'
miRNA:   3'- -CGGCa-CG--UCGCGCCagaGCuGCAGGa -5'
9350 5' -59.3 NC_002512.2 + 209556 0.76 0.356872
Target:  5'- aUCGUcucGgAGCGCGGUCUCGACGgcUCCUc -3'
miRNA:   3'- cGGCA---CgUCGCGCCAGAGCUGC--AGGA- -5'
9350 5' -59.3 NC_002512.2 + 207771 0.66 0.861241
Target:  5'- cGCCGUGguGguUGCGGga-CGGCGUCg- -3'
miRNA:   3'- -CGGCACguC--GCGCCagaGCUGCAGga -5'
9350 5' -59.3 NC_002512.2 + 202125 0.68 0.754222
Target:  5'- aGCUG-GUGGCGcCGGUCUCGGcCG-CCg -3'
miRNA:   3'- -CGGCaCGUCGC-GCCAGAGCU-GCaGGa -5'
9350 5' -59.3 NC_002512.2 + 199877 0.66 0.853946
Target:  5'- uCUGUGCGGCGgcucgcccUGGUCUCGAgacCGcCCg -3'
miRNA:   3'- cGGCACGUCGC--------GCCAGAGCU---GCaGGa -5'
9350 5' -59.3 NC_002512.2 + 196924 0.67 0.823029
Target:  5'- gGCCGagaGCAcgGCGGUCUUcACGUCCa -3'
miRNA:   3'- -CGGCa--CGUcgCGCCAGAGcUGCAGGa -5'
9350 5' -59.3 NC_002512.2 + 192788 0.67 0.814896
Target:  5'- cGUCGUGCGGCGCGGgcaCaACG-CCa -3'
miRNA:   3'- -CGGCACGUCGCGCCagaGcUGCaGGa -5'
9350 5' -59.3 NC_002512.2 + 191590 0.67 0.846471
Target:  5'- aGCC-UGUucggucGCGCGGUCgaguccUCGGCGUCUUc -3'
miRNA:   3'- -CGGcACGu-----CGCGCCAG------AGCUGCAGGA- -5'
9350 5' -59.3 NC_002512.2 + 190208 0.7 0.679278
Target:  5'- gGUCG-GCGGCGCGGUCguccggGACGgCCa -3'
miRNA:   3'- -CGGCaCGUCGCGCCAGag----CUGCaGGa -5'
9350 5' -59.3 NC_002512.2 + 189066 0.7 0.650393
Target:  5'- gGCCG-GCGGCgcucucgacgGCGaGUCUccgCGACGUCCg -3'
miRNA:   3'- -CGGCaCGUCG----------CGC-CAGA---GCUGCAGGa -5'
9350 5' -59.3 NC_002512.2 + 188649 0.7 0.640729
Target:  5'- cGCCGgcgGCGGCgGCGGcC-CGuCGUCCg -3'
miRNA:   3'- -CGGCa--CGUCG-CGCCaGaGCuGCAGGa -5'
9350 5' -59.3 NC_002512.2 + 184545 0.7 0.669674
Target:  5'- aGCCG-GCGGCGCGGgC-CGGCGgacggCCc -3'
miRNA:   3'- -CGGCaCGUCGCGCCaGaGCUGCa----GGa -5'
9350 5' -59.3 NC_002512.2 + 182453 0.73 0.48942
Target:  5'- cGCCGUGCgGGCGUGGUgCUCGugG-Ca- -3'
miRNA:   3'- -CGGCACG-UCGCGCCA-GAGCugCaGga -5'
9350 5' -59.3 NC_002512.2 + 181579 0.7 0.637829
Target:  5'- uCCGUcugcggcggcagggGCGGCG-GGUCcgCGACGUCCUc -3'
miRNA:   3'- cGGCA--------------CGUCGCgCCAGa-GCUGCAGGA- -5'
9350 5' -59.3 NC_002512.2 + 180444 0.66 0.884636
Target:  5'- cCCGgGCGGCGCccgucauuucucgacGG-CUCGGCGUCg- -3'
miRNA:   3'- cGGCaCGUCGCG---------------CCaGAGCUGCAGga -5'
9350 5' -59.3 NC_002512.2 + 178241 0.71 0.592453
Target:  5'- uCCGggGaCGGCGCGGUCUCcGgGUCCg -3'
miRNA:   3'- cGGCa-C-GUCGCGCCAGAGcUgCAGGa -5'
9350 5' -59.3 NC_002512.2 + 173917 0.67 0.846471
Target:  5'- gGUCGUGUGGCGUcccguGGUCUCuuuCGUCUc -3'
miRNA:   3'- -CGGCACGUCGCG-----CCAGAGcu-GCAGGa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.