miRNA display CGI


Results 1 - 20 of 27 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9353 3' -48 NC_002512.2 + 34550 0.66 0.999989
Target:  5'- cGGGUcCUAgcu---UCgUCCGCGUCaGGu -3'
miRNA:   3'- -CCCA-GAUauauuuAG-AGGCGCAGcCC- -5'
9353 3' -48 NC_002512.2 + 196358 0.66 0.999989
Target:  5'- aGGGUCg----GAggCUCCGCcgGcCGGGc -3'
miRNA:   3'- -CCCAGauauaUUuaGAGGCG--CaGCCC- -5'
9353 3' -48 NC_002512.2 + 205869 0.66 0.999985
Target:  5'- cGGUagUGUGUAuuauUUUUCGCGUCGcGGg -3'
miRNA:   3'- cCCAg-AUAUAUuu--AGAGGCGCAGC-CC- -5'
9353 3' -48 NC_002512.2 + 153020 0.66 0.999985
Target:  5'- cGGGUCggcgggAgcGGUCcCCG-GUCGGGu -3'
miRNA:   3'- -CCCAGaua---UauUUAGaGGCgCAGCCC- -5'
9353 3' -48 NC_002512.2 + 152970 0.66 0.999985
Target:  5'- cGGGUCggcgggAgcGGUCcCCG-GUCGGGu -3'
miRNA:   3'- -CCCAGaua---UauUUAGaGGCgCAGCCC- -5'
9353 3' -48 NC_002512.2 + 155654 0.66 0.999982
Target:  5'- cGGcGUCcggccgu-UCgccCCGCGUCGGGa -3'
miRNA:   3'- -CC-CAGauauauuuAGa--GGCGCAGCCC- -5'
9353 3' -48 NC_002512.2 + 176609 0.66 0.99998
Target:  5'- uGG-CcGUGUcGAUCUCCacccCGUCGGGg -3'
miRNA:   3'- cCCaGaUAUAuUUAGAGGc---GCAGCCC- -5'
9353 3' -48 NC_002512.2 + 208893 0.66 0.99998
Target:  5'- gGGGcCgg---GAAUCcCCGCG-CGGGa -3'
miRNA:   3'- -CCCaGauauaUUUAGaGGCGCaGCCC- -5'
9353 3' -48 NC_002512.2 + 224112 0.66 0.999973
Target:  5'- cGGUCgugGUGAccAUCUcggccguggacCCGCGcCGGGa -3'
miRNA:   3'- cCCAGauaUAUU--UAGA-----------GGCGCaGCCC- -5'
9353 3' -48 NC_002512.2 + 54251 0.66 0.999973
Target:  5'- cGGGUCU----GAAUCaCCGaCG-CGGGa -3'
miRNA:   3'- -CCCAGAuauaUUUAGaGGC-GCaGCCC- -5'
9353 3' -48 NC_002512.2 + 54445 0.66 0.999973
Target:  5'- cGGGUCU----GAAUCaCCGaCG-CGGGa -3'
miRNA:   3'- -CCCAGAuauaUUUAGaGGC-GCaGCCC- -5'
9353 3' -48 NC_002512.2 + 205126 0.67 0.999937
Target:  5'- cGGGUCUuc----GUCUCCGa--CGGGa -3'
miRNA:   3'- -CCCAGAuauauuUAGAGGCgcaGCCC- -5'
9353 3' -48 NC_002512.2 + 184046 0.67 0.999937
Target:  5'- uGGUCgaguucGUGUGAGa--CCGCGUCGGa -3'
miRNA:   3'- cCCAGa-----UAUAUUUagaGGCGCAGCCc -5'
9353 3' -48 NC_002512.2 + 120671 0.67 0.999918
Target:  5'- cGGGUCgauaucucgGUGAGUUUCUGCuccgagCGGGc -3'
miRNA:   3'- -CCCAGaua------UAUUUAGAGGCGca----GCCC- -5'
9353 3' -48 NC_002512.2 + 191723 0.67 0.999918
Target:  5'- --cUUUAaGUGGAcCUCCGCGUCGGu -3'
miRNA:   3'- cccAGAUaUAUUUaGAGGCGCAGCCc -5'
9353 3' -48 NC_002512.2 + 33432 0.67 0.999916
Target:  5'- uGGGUCgucGUGaucggagaacugcGAUCUCCG-GUCGuGGg -3'
miRNA:   3'- -CCCAGauaUAU-------------UUAGAGGCgCAGC-CC- -5'
9353 3' -48 NC_002512.2 + 166046 0.67 0.999893
Target:  5'- gGGGUC-AUcaAGGUCuUCUGCG-CGGGc -3'
miRNA:   3'- -CCCAGaUAuaUUUAG-AGGCGCaGCCC- -5'
9353 3' -48 NC_002512.2 + 111705 0.67 0.999893
Target:  5'- gGGGUCgcggAUGacgacgGAGUCUCCG-G-CGGGc -3'
miRNA:   3'- -CCCAGa---UAUa-----UUUAGAGGCgCaGCCC- -5'
9353 3' -48 NC_002512.2 + 38979 0.68 0.999824
Target:  5'- cGGGUCUGUGUAAAag--CGUGUCGuuuGGa -3'
miRNA:   3'- -CCCAGAUAUAUUUagagGCGCAGC---CC- -5'
9353 3' -48 NC_002512.2 + 27024 0.68 0.999776
Target:  5'- uGGUCUAUAaacGGAUCcaCCGCuGUCGGu -3'
miRNA:   3'- cCCAGAUAUa--UUUAGa-GGCG-CAGCCc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.