miRNA display CGI


Results 1 - 20 of 44 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9355 3' -51.8 NC_002512.2 + 153398 0.66 0.998125
Target:  5'- gACGUggaGCGCGGCGgCG-GUCgagGugGCg -3'
miRNA:   3'- gUGCG---UGUGUUGCaGCaCAGa--CugCG- -5'
9355 3' -51.8 NC_002512.2 + 124702 0.66 0.998125
Target:  5'- gGCGCACGC--CGUCcUGg--GGCGCg -3'
miRNA:   3'- gUGCGUGUGuuGCAGcACagaCUGCG- -5'
9355 3' -51.8 NC_002512.2 + 90933 0.66 0.998125
Target:  5'- gACGgGCGCGAcCGgggCGUG-CgugGGCGCg -3'
miRNA:   3'- gUGCgUGUGUU-GCa--GCACaGa--CUGCG- -5'
9355 3' -51.8 NC_002512.2 + 154262 0.66 0.997775
Target:  5'- cCGCGUGCGCGugcccGCGUgcgCGUGcgCaGACGCg -3'
miRNA:   3'- -GUGCGUGUGU-----UGCA---GCACa-GaCUGCG- -5'
9355 3' -51.8 NC_002512.2 + 220634 0.66 0.997775
Target:  5'- -cUGCG-ACGACGUCGUc-CUGugGCg -3'
miRNA:   3'- guGCGUgUGUUGCAGCAcaGACugCG- -5'
9355 3' -51.8 NC_002512.2 + 120792 0.66 0.997373
Target:  5'- gGCGCugACGGCcacgGUGUCgacggaccUGGCGCg -3'
miRNA:   3'- gUGCGugUGUUGcag-CACAG--------ACUGCG- -5'
9355 3' -51.8 NC_002512.2 + 184733 0.66 0.997373
Target:  5'- aCGCGCGCAuCGACGaCGUGaggaUCggcgGGCGg -3'
miRNA:   3'- -GUGCGUGU-GUUGCaGCAC----AGa---CUGCg -5'
9355 3' -51.8 NC_002512.2 + 188911 0.66 0.997373
Target:  5'- uGCGCGCGCG--GUCGgagaGUCccgGugGCg -3'
miRNA:   3'- gUGCGUGUGUugCAGCa---CAGa--CugCG- -5'
9355 3' -51.8 NC_002512.2 + 204700 0.66 0.997373
Target:  5'- gGCGgACGCGACGUCGg--C-GACGg -3'
miRNA:   3'- gUGCgUGUGUUGCAGCacaGaCUGCg -5'
9355 3' -51.8 NC_002512.2 + 119948 0.66 0.996386
Target:  5'- -cCGCACGCggUGgacuUCGUGgcgCUGGgGCc -3'
miRNA:   3'- guGCGUGUGuuGC----AGCACa--GACUgCG- -5'
9355 3' -51.8 NC_002512.2 + 163276 0.66 0.996386
Target:  5'- gACGCACgugaaggaugGCAACGUCGagGUCUaccaGACcaGCg -3'
miRNA:   3'- gUGCGUG----------UGUUGCAGCa-CAGA----CUG--CG- -5'
9355 3' -51.8 NC_002512.2 + 216784 0.66 0.996386
Target:  5'- aGCGCcaggcagaACACGGCGUCGUugacgaUGGCGUc -3'
miRNA:   3'- gUGCG--------UGUGUUGCAGCAcag---ACUGCG- -5'
9355 3' -51.8 NC_002512.2 + 129525 0.66 0.995788
Target:  5'- cCGCGUACaggACGACGcCGUG-CUG-CGUg -3'
miRNA:   3'- -GUGCGUG---UGUUGCaGCACaGACuGCG- -5'
9355 3' -51.8 NC_002512.2 + 217626 0.67 0.995112
Target:  5'- gGCGC-CACGGgucUCGUG-CUGAUGCg -3'
miRNA:   3'- gUGCGuGUGUUgc-AGCACaGACUGCG- -5'
9355 3' -51.8 NC_002512.2 + 210557 0.67 0.995112
Target:  5'- uCugGUGUACGAgGUCGUGgagaUGACGUg -3'
miRNA:   3'- -GugCGUGUGUUgCAGCACag--ACUGCG- -5'
9355 3' -51.8 NC_002512.2 + 9770 0.67 0.993495
Target:  5'- uGCGCGCAC-GCGUgaCGUGUUaaaaaaaGAUGCg -3'
miRNA:   3'- gUGCGUGUGuUGCA--GCACAGa------CUGCG- -5'
9355 3' -51.8 NC_002512.2 + 180603 0.67 0.992539
Target:  5'- -cCGuCACACAGCGUCGgaGUCcGAguucCGCg -3'
miRNA:   3'- guGC-GUGUGUUGCAGCa-CAGaCU----GCG- -5'
9355 3' -51.8 NC_002512.2 + 132742 0.67 0.992539
Target:  5'- gGCGCAgCGCGGCGUCGUcccgCaGGCGg -3'
miRNA:   3'- gUGCGU-GUGUUGCAGCAca--GaCUGCg -5'
9355 3' -51.8 NC_002512.2 + 135006 0.67 0.992438
Target:  5'- gACGUggaccgacauccuACACGACGccaggaUCGggggcccGUCUGACGCg -3'
miRNA:   3'- gUGCG-------------UGUGUUGC------AGCa------CAGACUGCG- -5'
9355 3' -51.8 NC_002512.2 + 191045 0.67 0.991475
Target:  5'- gCGCgGCGCACGugGaccggUCGcGcCUGGCGCu -3'
miRNA:   3'- -GUG-CGUGUGUugC-----AGCaCaGACUGCG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.