miRNA display CGI


Results 21 - 40 of 96 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9357 5' -59.1 NC_002512.2 + 158444 0.71 0.61822
Target:  5'- -gGCCuacuacguggGCuCCGGCGUCGAGCGCa--- -3'
miRNA:   3'- gaCGG----------CGuGGCCGCAGCUCGUGcaug -5'
9357 5' -59.1 NC_002512.2 + 169041 0.71 0.627968
Target:  5'- -aGCgGCGCCGGCaucuccUCGGGCGCGa-- -3'
miRNA:   3'- gaCGgCGUGGCCGc-----AGCUCGUGCaug -5'
9357 5' -59.1 NC_002512.2 + 220592 0.71 0.627968
Target:  5'- gUGCCGgGauCCGGuCGUgcgCGAGCugGUGCu -3'
miRNA:   3'- gACGGCgU--GGCC-GCA---GCUCGugCAUG- -5'
9357 5' -59.1 NC_002512.2 + 105075 0.7 0.657201
Target:  5'- -aGCCGaagaaGCCGGCgGUCGGGUcgACGUGu -3'
miRNA:   3'- gaCGGCg----UGGCCG-CAGCUCG--UGCAUg -5'
9357 5' -59.1 NC_002512.2 + 147 0.7 0.675642
Target:  5'- -aGCCgggcgggGCGCCGGCGgagGAGCGCGcGCc -3'
miRNA:   3'- gaCGG-------CGUGGCCGCag-CUCGUGCaUG- -5'
9357 5' -59.1 NC_002512.2 + 229550 0.7 0.675642
Target:  5'- -aGCCgggcgggGCGCCGGCGgagGAGCGCGcGCc -3'
miRNA:   3'- gaCGG-------CGUGGCCGCag-CUCGUGCaUG- -5'
9357 5' -59.1 NC_002512.2 + 88521 0.7 0.686269
Target:  5'- -gGCCGaCACgUGGuCGuucgugaaccccUCGAGCACGUACg -3'
miRNA:   3'- gaCGGC-GUG-GCC-GC------------AGCUCGUGCAUG- -5'
9357 5' -59.1 NC_002512.2 + 207614 0.7 0.686269
Target:  5'- -gGCUGCugCGGCGgCGAGUuccucgGCGUGg -3'
miRNA:   3'- gaCGGCGugGCCGCaGCUCG------UGCAUg -5'
9357 5' -59.1 NC_002512.2 + 184438 0.7 0.686269
Target:  5'- -gGCCGcCGCCGGCGUCGGaCAgGg-- -3'
miRNA:   3'- gaCGGC-GUGGCCGCAGCUcGUgCaug -5'
9357 5' -59.1 NC_002512.2 + 91873 0.7 0.686269
Target:  5'- -gGCCGCcguCCGGCG-CGGGCgGCGgcgcgGCg -3'
miRNA:   3'- gaCGGCGu--GGCCGCaGCUCG-UGCa----UG- -5'
9357 5' -59.1 NC_002512.2 + 93961 0.7 0.686269
Target:  5'- aUGCCGUACCGacucaggacGUGUCGcuGCGCGUccGCg -3'
miRNA:   3'- gACGGCGUGGC---------CGCAGCu-CGUGCA--UG- -5'
9357 5' -59.1 NC_002512.2 + 120890 0.69 0.695887
Target:  5'- -cGCC--GCCGGCGccgaCGAGCAgGUACa -3'
miRNA:   3'- gaCGGcgUGGCCGCa---GCUCGUgCAUG- -5'
9357 5' -59.1 NC_002512.2 + 74647 0.69 0.695887
Target:  5'- -cGCCGCgACgGGCGggacggccgCGGGCGCGUu- -3'
miRNA:   3'- gaCGGCG-UGgCCGCa--------GCUCGUGCAug -5'
9357 5' -59.1 NC_002512.2 + 173630 0.69 0.695887
Target:  5'- -cGCCGCGgCGGCGaaccccgggUCGGGgGCGgcgGCa -3'
miRNA:   3'- gaCGGCGUgGCCGC---------AGCUCgUGCa--UG- -5'
9357 5' -59.1 NC_002512.2 + 126338 0.69 0.705457
Target:  5'- -cGCCGCGuCCGG-GaCGGGCGCGcACg -3'
miRNA:   3'- gaCGGCGU-GGCCgCaGCUCGUGCaUG- -5'
9357 5' -59.1 NC_002512.2 + 167750 0.69 0.705457
Target:  5'- gCUGCCGgGCguCGGCGaccggaUCGAGUACGUc- -3'
miRNA:   3'- -GACGGCgUG--GCCGC------AGCUCGUGCAug -5'
9357 5' -59.1 NC_002512.2 + 99273 0.69 0.705457
Target:  5'- -cGCCGgACgCGGgGUCGAGCAgGa-- -3'
miRNA:   3'- gaCGGCgUG-GCCgCAGCUCGUgCaug -5'
9357 5' -59.1 NC_002512.2 + 128026 0.69 0.71497
Target:  5'- --cCCGCcCCGGCGUCGAagagcuGCACGg-- -3'
miRNA:   3'- gacGGCGuGGCCGCAGCU------CGUGCaug -5'
9357 5' -59.1 NC_002512.2 + 211365 0.69 0.733797
Target:  5'- cCUGaCCGC-CCGGCG-CG-GCAUGcUGCg -3'
miRNA:   3'- -GAC-GGCGuGGCCGCaGCuCGUGC-AUG- -5'
9357 5' -59.1 NC_002512.2 + 217318 0.69 0.733797
Target:  5'- -gGCUcCGCCaGCGUCuGcAGCACGUACg -3'
miRNA:   3'- gaCGGcGUGGcCGCAG-C-UCGUGCAUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.