miRNA display CGI


Results 1 - 20 of 100 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9359 5' -54 NC_002512.2 + 229630 0.67 0.968941
Target:  5'- -aCCGAAGGGCaGGcGGGcGGGAaAAGGg -3'
miRNA:   3'- caGGCUUCUUG-CCuCCU-CCCUcUUCC- -5'
9359 5' -54 NC_002512.2 + 229581 0.72 0.841757
Target:  5'- -gCCGGgaGGGACGGGGGcgagaaggggcccgGGcGGAGAGGGa -3'
miRNA:   3'- caGGCU--UCUUGCCUCC--------------UC-CCUCUUCC- -5'
9359 5' -54 NC_002512.2 + 229458 0.73 0.76673
Target:  5'- -gCgGGAuGAGCgGGAGGAGGG-GAAGGg -3'
miRNA:   3'- caGgCUU-CUUG-CCUCCUCCCuCUUCC- -5'
9359 5' -54 NC_002512.2 + 229301 0.77 0.570623
Target:  5'- uGUUCGGAGAggagGCaGGAGGAGgaaGGAGAGGGa -3'
miRNA:   3'- -CAGGCUUCU----UG-CCUCCUC---CCUCUUCC- -5'
9359 5' -54 NC_002512.2 + 229264 0.72 0.819719
Target:  5'- -gUCGAgacagAGAAgGGAGGA-GGAGAAGGg -3'
miRNA:   3'- caGGCU-----UCUUgCCUCCUcCCUCUUCC- -5'
9359 5' -54 NC_002512.2 + 229194 0.69 0.943337
Target:  5'- ---aGAAGAGCGGA-GAGGGAaagagcggagaGAGGGg -3'
miRNA:   3'- caggCUUCUUGCCUcCUCCCU-----------CUUCC- -5'
9359 5' -54 NC_002512.2 + 229039 0.73 0.775896
Target:  5'- --gCGGAGcagaGGCaGGAGGAGGGAGGAGa -3'
miRNA:   3'- cagGCUUC----UUG-CCUCCUCCCUCUUCc -5'
9359 5' -54 NC_002512.2 + 228963 0.77 0.600365
Target:  5'- ---aGAGGGGCGGAGGGcGGGAGAcGGa -3'
miRNA:   3'- caggCUUCUUGCCUCCU-CCCUCUuCC- -5'
9359 5' -54 NC_002512.2 + 228920 0.7 0.918409
Target:  5'- ---aGAGGAGCGGAGaGAGaaGGAgGAAGGg -3'
miRNA:   3'- caggCUUCUUGCCUC-CUC--CCU-CUUCC- -5'
9359 5' -54 NC_002512.2 + 228879 0.69 0.934048
Target:  5'- -aCCGGAGGccgggcgaguggAUGaGAGGAcGGAGAAGGa -3'
miRNA:   3'- caGGCUUCU------------UGC-CUCCUcCCUCUUCC- -5'
9359 5' -54 NC_002512.2 + 228778 0.72 0.828027
Target:  5'- -aCCG-AGAcgGCGGAgacgGGAGaGGAGAGGGa -3'
miRNA:   3'- caGGCuUCU--UGCCU----CCUC-CCUCUUCC- -5'
9359 5' -54 NC_002512.2 + 228490 0.83 0.298432
Target:  5'- -aCCGAAGAcGCGGAGGGGcGAGAGGGa -3'
miRNA:   3'- caGGCUUCU-UGCCUCCUCcCUCUUCC- -5'
9359 5' -54 NC_002512.2 + 228404 0.82 0.35627
Target:  5'- uGUCCGggGGACGGGgcgcuGGGGGGcGggGGc -3'
miRNA:   3'- -CAGGCuuCUUGCCU-----CCUCCCuCuuCC- -5'
9359 5' -54 NC_002512.2 + 228261 0.68 0.955594
Target:  5'- --gCGggGGcgacugaccGCGGAccgGGuGGGAGAGGGa -3'
miRNA:   3'- cagGCuuCU---------UGCCU---CCuCCCUCUUCC- -5'
9359 5' -54 NC_002512.2 + 227951 0.7 0.900729
Target:  5'- -gCgGggGAgcGCGGGGGAgccGGaGAGGAGGg -3'
miRNA:   3'- caGgCuuCU--UGCCUCCU---CC-CUCUUCC- -5'
9359 5' -54 NC_002512.2 + 227527 0.85 0.236714
Target:  5'- aGUCCGgcG-GCGGAcGGGGGGAGGAGGg -3'
miRNA:   3'- -CAGGCuuCuUGCCU-CCUCCCUCUUCC- -5'
9359 5' -54 NC_002512.2 + 227334 0.73 0.775896
Target:  5'- -cCCGAGGAaggggACGGAGaGAcGGGAcGGAGGa -3'
miRNA:   3'- caGGCUUCU-----UGCCUC-CU-CCCU-CUUCC- -5'
9359 5' -54 NC_002512.2 + 226587 0.68 0.951729
Target:  5'- -gCCaGGAGGGCGcGGcccGGGGGAGGAGGg -3'
miRNA:   3'- caGG-CUUCUUGC-CUc--CUCCCUCUUCC- -5'
9359 5' -54 NC_002512.2 + 226455 0.66 0.986629
Target:  5'- -aCCGAccAGcccCGcGAGGcGGGAGGAGGc -3'
miRNA:   3'- caGGCU--UCuu-GC-CUCCuCCCUCUUCC- -5'
9359 5' -54 NC_002512.2 + 226248 0.78 0.541251
Target:  5'- -gCCGGAGGA-GGAGGAGGaGAGGAGa -3'
miRNA:   3'- caGGCUUCUUgCCUCCUCC-CUCUUCc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.