Results 21 - 40 of 49 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
9361 | 5' | -56.4 | NC_002512.2 | + | 186835 | 0.68 | 0.893188 |
Target: 5'- cGGCGAggCCCUGcG-CGUCgCCGAGGaccuGCGc -3' miRNA: 3'- -CCGCUa-GGGAC-CaGCAG-GGCUUU----CGC- -5' |
|||||||
9361 | 5' | -56.4 | NC_002512.2 | + | 204794 | 0.68 | 0.893188 |
Target: 5'- aGGaGAcgCCCgggaGGUccgCGUCCCGggGGCGc -3' miRNA: 3'- -CCgCUa-GGGa---CCA---GCAGGGCuuUCGC- -5' |
|||||||
9361 | 5' | -56.4 | NC_002512.2 | + | 151546 | 0.68 | 0.899446 |
Target: 5'- aGgGGUCCCgucccGGUCucgccuUCCCGAGAGCc -3' miRNA: 3'- cCgCUAGGGa----CCAGc-----AGGGCUUUCGc -5' |
|||||||
9361 | 5' | -56.4 | NC_002512.2 | + | 148808 | 0.68 | 0.905492 |
Target: 5'- cGGCaccGUCUC-GGagcUCGUCCUGggGGCGg -3' miRNA: 3'- -CCGc--UAGGGaCC---AGCAGGGCuuUCGC- -5' |
|||||||
9361 | 5' | -56.4 | NC_002512.2 | + | 132741 | 0.68 | 0.905492 |
Target: 5'- aGGCGcagCgCgGcGUCGUCCCGcAGGCGg -3' miRNA: 3'- -CCGCua-GgGaC-CAGCAGGGCuUUCGC- -5' |
|||||||
9361 | 5' | -56.4 | NC_002512.2 | + | 126372 | 0.68 | 0.905492 |
Target: 5'- -aCGGUCCuCUGGcCG-CCCGGgaGAGCGc -3' miRNA: 3'- ccGCUAGG-GACCaGCaGGGCU--UUCGC- -5' |
|||||||
9361 | 5' | -56.4 | NC_002512.2 | + | 108106 | 0.68 | 0.905492 |
Target: 5'- cGGCG-UCCCcgccucggcGGUCcgcgGUCCCGAGAGgCGc -3' miRNA: 3'- -CCGCuAGGGa--------CCAG----CAGGGCUUUC-GC- -5' |
|||||||
9361 | 5' | -56.4 | NC_002512.2 | + | 204311 | 0.68 | 0.911322 |
Target: 5'- aGCGAUCCgCUGGUCGUCgCCc------ -3' miRNA: 3'- cCGCUAGG-GACCAGCAG-GGcuuucgc -5' |
|||||||
9361 | 5' | -56.4 | NC_002512.2 | + | 186954 | 0.68 | 0.911322 |
Target: 5'- uGGCGGagaucccccgcUCCCgGGcCGUCCUGgcGGUGc -3' miRNA: 3'- -CCGCU-----------AGGGaCCaGCAGGGCuuUCGC- -5' |
|||||||
9361 | 5' | -56.4 | NC_002512.2 | + | 141702 | 0.67 | 0.922332 |
Target: 5'- -aCGAcUCCCUccUCGUCCCGGAcGCGa -3' miRNA: 3'- ccGCU-AGGGAccAGCAGGGCUUuCGC- -5' |
|||||||
9361 | 5' | -56.4 | NC_002512.2 | + | 223115 | 0.67 | 0.924428 |
Target: 5'- gGGgGAUCCgCgGGUCGaguccgucaucgucuUCCCGAuccAGCGc -3' miRNA: 3'- -CCgCUAGG-GaCCAGC---------------AGGGCUu--UCGC- -5' |
|||||||
9361 | 5' | -56.4 | NC_002512.2 | + | 223194 | 0.67 | 0.927508 |
Target: 5'- gGGCcg-CCCgacgGGgacggCGUCCCGGAGcGCGu -3' miRNA: 3'- -CCGcuaGGGa---CCa----GCAGGGCUUU-CGC- -5' |
|||||||
9361 | 5' | -56.4 | NC_002512.2 | + | 205089 | 0.67 | 0.927508 |
Target: 5'- cGGCGAUCCguccucgGGgggCGcgCCCGGacccGAGCGg -3' miRNA: 3'- -CCGCUAGGga-----CCa--GCa-GGGCU----UUCGC- -5' |
|||||||
9361 | 5' | -56.4 | NC_002512.2 | + | 126985 | 0.67 | 0.927508 |
Target: 5'- cGCGGUCCUcucccagcgcgGGUCGUaCCCGGgucccccguAGGCGu -3' miRNA: 3'- cCGCUAGGGa----------CCAGCA-GGGCU---------UUCGC- -5' |
|||||||
9361 | 5' | -56.4 | NC_002512.2 | + | 180147 | 0.67 | 0.932466 |
Target: 5'- gGGCGGUCCaggacGGccucCGUCCCGAGcaGGUa -3' miRNA: 3'- -CCGCUAGGga---CCa---GCAGGGCUU--UCGc -5' |
|||||||
9361 | 5' | -56.4 | NC_002512.2 | + | 122287 | 0.67 | 0.932466 |
Target: 5'- uGGUGcugCuCCUGGUCGUCgUGAccaagaAGGCGa -3' miRNA: 3'- -CCGCua-G-GGACCAGCAGgGCU------UUCGC- -5' |
|||||||
9361 | 5' | -56.4 | NC_002512.2 | + | 108769 | 0.67 | 0.93674 |
Target: 5'- gGGCGAUCCggCU-GUCGUCaCCGAAcucuacgGGCc -3' miRNA: 3'- -CCGCUAGG--GAcCAGCAG-GGCUU-------UCGc -5' |
|||||||
9361 | 5' | -56.4 | NC_002512.2 | + | 218474 | 0.67 | 0.937204 |
Target: 5'- cGCGGucaucuccucgUCCCgcgGGUCGUCCgCGuccGAGCc -3' miRNA: 3'- cCGCU-----------AGGGa--CCAGCAGG-GCu--UUCGc -5' |
|||||||
9361 | 5' | -56.4 | NC_002512.2 | + | 171593 | 0.67 | 0.945609 |
Target: 5'- cGGCGggCUCUccuacaacaucgaGGUCGUcgccuucgggCCCGAcAGCGa -3' miRNA: 3'- -CCGCuaGGGA-------------CCAGCA----------GGGCUuUCGC- -5' |
|||||||
9361 | 5' | -56.4 | NC_002512.2 | + | 167713 | 0.67 | 0.946029 |
Target: 5'- uGGCGGUCUaccGGUC-UCUCGucGAGCGg -3' miRNA: 3'- -CCGCUAGGga-CCAGcAGGGCu-UUCGC- -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home