miRNA display CGI


Results 1 - 20 of 49 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9361 5' -56.4 NC_002512.2 + 223944 0.7 0.835927
Target:  5'- aGGuCGAUCCCUGGggacgGUUCCGGc-GCGa -3'
miRNA:   3'- -CC-GCUAGGGACCag---CAGGGCUuuCGC- -5'
9361 5' -56.4 NC_002512.2 + 223194 0.67 0.927508
Target:  5'- gGGCcg-CCCgacgGGgacggCGUCCCGGAGcGCGu -3'
miRNA:   3'- -CCGcuaGGGa---CCa----GCAGGGCUUU-CGC- -5'
9361 5' -56.4 NC_002512.2 + 223115 0.67 0.924428
Target:  5'- gGGgGAUCCgCgGGUCGaguccgucaucgucuUCCCGAuccAGCGc -3'
miRNA:   3'- -CCgCUAGG-GaCCAGC---------------AGGGCUu--UCGC- -5'
9361 5' -56.4 NC_002512.2 + 223043 0.66 0.955489
Target:  5'- cGGCGAgguccgggaggugcCCCUGGUCGcCaCCGu-GGCc -3'
miRNA:   3'- -CCGCUa-------------GGGACCAGCaG-GGCuuUCGc -5'
9361 5' -56.4 NC_002512.2 + 219833 0.66 0.961129
Target:  5'- gGGuCGGUCggggGGUCcggCCCGggGGCGg -3'
miRNA:   3'- -CC-GCUAGgga-CCAGca-GGGCuuUCGC- -5'
9361 5' -56.4 NC_002512.2 + 218474 0.67 0.937204
Target:  5'- cGCGGucaucuccucgUCCCgcgGGUCGUCCgCGuccGAGCc -3'
miRNA:   3'- cCGCU-----------AGGGa--CCAGCAGG-GCu--UUCGc -5'
9361 5' -56.4 NC_002512.2 + 217485 0.71 0.756985
Target:  5'- cGCGAUCCC-GG-CGccgccgccgccgCCCGAAGGCGa -3'
miRNA:   3'- cCGCUAGGGaCCaGCa-----------GGGCUUUCGC- -5'
9361 5' -56.4 NC_002512.2 + 215155 0.71 0.776871
Target:  5'- aGGCGAcgagCaCCUGGcCGUCCUgcugcucgGGGAGCGg -3'
miRNA:   3'- -CCGCUa---G-GGACCaGCAGGG--------CUUUCGC- -5'
9361 5' -56.4 NC_002512.2 + 207656 0.68 0.886721
Target:  5'- cGGCGG-CCgUGGUggCGUCCCG--GGCu -3'
miRNA:   3'- -CCGCUaGGgACCA--GCAGGGCuuUCGc -5'
9361 5' -56.4 NC_002512.2 + 205089 0.67 0.927508
Target:  5'- cGGCGAUCCguccucgGGgggCGcgCCCGGacccGAGCGg -3'
miRNA:   3'- -CCGCUAGGga-----CCa--GCa-GGGCU----UUCGC- -5'
9361 5' -56.4 NC_002512.2 + 204794 0.68 0.893188
Target:  5'- aGGaGAcgCCCgggaGGUccgCGUCCCGggGGCGc -3'
miRNA:   3'- -CCgCUa-GGGa---CCA---GCAGGGCuuUCGC- -5'
9361 5' -56.4 NC_002512.2 + 204311 0.68 0.911322
Target:  5'- aGCGAUCCgCUGGUCGUCgCCc------ -3'
miRNA:   3'- cCGCUAGG-GACCAGCAG-GGcuuucgc -5'
9361 5' -56.4 NC_002512.2 + 202563 0.8 0.322767
Target:  5'- cGGCGGaucuccugcgacagaUCCCUGGUC-UCuCCGAGAGCGu -3'
miRNA:   3'- -CCGCU---------------AGGGACCAGcAG-GGCUUUCGC- -5'
9361 5' -56.4 NC_002512.2 + 200730 0.69 0.858831
Target:  5'- cGGCGGUCCgaacgGGUCGUaCCGGgcGUGg -3'
miRNA:   3'- -CCGCUAGGga---CCAGCAgGGCUuuCGC- -5'
9361 5' -56.4 NC_002512.2 + 189938 0.67 0.946029
Target:  5'- cGGCGAcugcUCCCccucGGUCuUCCCGGaccucuucGAGCu -3'
miRNA:   3'- -CCGCU----AGGGa---CCAGcAGGGCU--------UUCGc -5'
9361 5' -56.4 NC_002512.2 + 187817 0.66 0.953618
Target:  5'- -cCGG-CCCUGGUCGUCCaGAccguccgGAGCc -3'
miRNA:   3'- ccGCUaGGGACCAGCAGGgCU-------UUCGc -5'
9361 5' -56.4 NC_002512.2 + 186954 0.68 0.911322
Target:  5'- uGGCGGagaucccccgcUCCCgGGcCGUCCUGgcGGUGc -3'
miRNA:   3'- -CCGCU-----------AGGGaCCaGCAGGGCuuUCGC- -5'
9361 5' -56.4 NC_002512.2 + 186835 0.68 0.893188
Target:  5'- cGGCGAggCCCUGcG-CGUCgCCGAGGaccuGCGc -3'
miRNA:   3'- -CCGCUa-GGGAC-CaGCAG-GGCUUU----CGC- -5'
9361 5' -56.4 NC_002512.2 + 184758 0.71 0.758815
Target:  5'- cGGCGGgcggCCCgUGGUCGUcgacCCCGAGGacGUGg -3'
miRNA:   3'- -CCGCUa---GGG-ACCAGCA----GGGCUUU--CGC- -5'
9361 5' -56.4 NC_002512.2 + 180147 0.67 0.932466
Target:  5'- gGGCGGUCCaggacGGccucCGUCCCGAGcaGGUa -3'
miRNA:   3'- -CCGCUAGGga---CCa---GCAGGGCUU--UCGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.