miRNA display CGI


Results 1 - 20 of 168 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9362 5' -57.3 NC_002512.2 + 124929 0.86 0.116269
Target:  5'- -cGAGAGaCACGAGGCCGGCG-CCGCg -3'
miRNA:   3'- caCUCUUcGUGCUCCGGUCGCuGGCG- -5'
9362 5' -57.3 NC_002512.2 + 228669 0.81 0.225589
Target:  5'- -cGGGGAGgACGGGGCCGG-GGCCGCc -3'
miRNA:   3'- caCUCUUCgUGCUCCGGUCgCUGGCG- -5'
9362 5' -57.3 NC_002512.2 + 209345 0.8 0.259524
Target:  5'- -gGAGGuguGGUACGAGGUCGGCGACCugGCg -3'
miRNA:   3'- caCUCU---UCGUGCUCCGGUCGCUGG--CG- -5'
9362 5' -57.3 NC_002512.2 + 217871 0.79 0.271728
Target:  5'- cGUGGGGAGCGCguccGAGaUCGGCGGCCGCg -3'
miRNA:   3'- -CACUCUUCGUG----CUCcGGUCGCUGGCG- -5'
9362 5' -57.3 NC_002512.2 + 227468 0.79 0.290892
Target:  5'- -gGAGAGGC-CGGGGgCGGcCGGCCGCg -3'
miRNA:   3'- caCUCUUCGuGCUCCgGUC-GCUGGCG- -5'
9362 5' -57.3 NC_002512.2 + 96198 0.79 0.290892
Target:  5'- -cGGGAGGCggccGCGAGGUCggccacGGCGGCCGCg -3'
miRNA:   3'- caCUCUUCG----UGCUCCGG------UCGCUGGCG- -5'
9362 5' -57.3 NC_002512.2 + 184615 0.79 0.297511
Target:  5'- -cGAGAcgAGCGCGAGcccccGCCGGCGGCCGa -3'
miRNA:   3'- caCUCU--UCGUGCUC-----CGGUCGCUGGCg -5'
9362 5' -57.3 NC_002512.2 + 149282 0.78 0.325152
Target:  5'- -cGAGGAGCGCGAGGagGGCGagaucgucgaccGCCGCg -3'
miRNA:   3'- caCUCUUCGUGCUCCggUCGC------------UGGCG- -5'
9362 5' -57.3 NC_002512.2 + 162134 0.77 0.369319
Target:  5'- -gGAGAcgaccccGGCucGCGAGGCCGGCacgccGACCGCg -3'
miRNA:   3'- caCUCU-------UCG--UGCUCCGGUCG-----CUGGCG- -5'
9362 5' -57.3 NC_002512.2 + 191468 0.76 0.410677
Target:  5'- gGUGGGccGAGUACGAGGCgccggacagcgCGGCGACCGg -3'
miRNA:   3'- -CACUC--UUCGUGCUCCG-----------GUCGCUGGCg -5'
9362 5' -57.3 NC_002512.2 + 121383 0.76 0.410677
Target:  5'- -aGAGGAGgGCGAcGGCCGGaCGgaGCCGCg -3'
miRNA:   3'- caCUCUUCgUGCU-CCGGUC-GC--UGGCG- -5'
9362 5' -57.3 NC_002512.2 + 167744 0.76 0.419118
Target:  5'- -cGAGGAGCugcCGGGcGUCGGCGACCGg -3'
miRNA:   3'- caCUCUUCGu--GCUC-CGGUCGCUGGCg -5'
9362 5' -57.3 NC_002512.2 + 167148 0.76 0.435442
Target:  5'- -cGAGGucGGCgugccccGCGAGGCCGuCGACCGCg -3'
miRNA:   3'- caCUCU--UCG-------UGCUCCGGUcGCUGGCG- -5'
9362 5' -57.3 NC_002512.2 + 172139 0.76 0.436311
Target:  5'- -cGAGGAGCGCGAcGGgCAGCGggucuACUGCg -3'
miRNA:   3'- caCUCUUCGUGCU-CCgGUCGC-----UGGCG- -5'
9362 5' -57.3 NC_002512.2 + 152669 0.75 0.445058
Target:  5'- uUGuGAAcGUACuGGGGCCGGCGGCCGg -3'
miRNA:   3'- cACuCUU-CGUG-CUCCGGUCGCUGGCg -5'
9362 5' -57.3 NC_002512.2 + 146952 0.75 0.462842
Target:  5'- -cGuGAAGCGCGAcGaCGGCGGCCGCg -3'
miRNA:   3'- caCuCUUCGUGCUcCgGUCGCUGGCG- -5'
9362 5' -57.3 NC_002512.2 + 90501 0.74 0.527782
Target:  5'- -cGGGAucggGGC-CGAGGCCGGCGGCgGa -3'
miRNA:   3'- caCUCU----UCGuGCUCCGGUCGCUGgCg -5'
9362 5' -57.3 NC_002512.2 + 127230 0.74 0.527782
Target:  5'- gGUGAGAcgcgGGCACGAccgaggcgacGGCCggaacGGCGACgGCg -3'
miRNA:   3'- -CACUCU----UCGUGCU----------CCGG-----UCGCUGgCG- -5'
9362 5' -57.3 NC_002512.2 + 121275 0.73 0.576163
Target:  5'- -cGAGAgacGGgACG-GGCCcGCGGCCGCc -3'
miRNA:   3'- caCUCU---UCgUGCuCCGGuCGCUGGCG- -5'
9362 5' -57.3 NC_002512.2 + 219874 0.73 0.585974
Target:  5'- gGUGAcGAGGC-CGGGGUCGGagacgagcCGACCGCc -3'
miRNA:   3'- -CACU-CUUCGuGCUCCGGUC--------GCUGGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.