miRNA display CGI


Results 1 - 20 of 168 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9362 5' -57.3 NC_002512.2 + 142 0.67 0.889429
Target:  5'- -cGGGGAGCcggGCGGGgcGCCGGCGGaggagCGCg -3'
miRNA:   3'- caCUCUUCG---UGCUC--CGGUCGCUg----GCG- -5'
9362 5' -57.3 NC_002512.2 + 50795 0.7 0.751797
Target:  5'- -cGAGAAGUccuCGGGGaUCAGCGGCaGCa -3'
miRNA:   3'- caCUCUUCGu--GCUCC-GGUCGCUGgCG- -5'
9362 5' -57.3 NC_002512.2 + 55899 0.67 0.895876
Target:  5'- cUGAGggGCugGA-GCCAucuccCGugCGCc -3'
miRNA:   3'- cACUCuuCGugCUcCGGUc----GCugGCG- -5'
9362 5' -57.3 NC_002512.2 + 71559 0.7 0.742439
Target:  5'- cUGAGGAcgACGAGGaCAGCGACCa- -3'
miRNA:   3'- cACUCUUcgUGCUCCgGUCGCUGGcg -5'
9362 5' -57.3 NC_002512.2 + 75744 0.66 0.919487
Target:  5'- -cGGGAGGCGacCGAGcgcgcGUCGGaGACCGCg -3'
miRNA:   3'- caCUCUUCGU--GCUC-----CGGUCgCUGGCG- -5'
9362 5' -57.3 NC_002512.2 + 79233 0.68 0.82242
Target:  5'- -aGAGAA-CGaGAGGCCGuCGGCCGCc -3'
miRNA:   3'- caCUCUUcGUgCUCCGGUcGCUGGCG- -5'
9362 5' -57.3 NC_002512.2 + 81926 0.71 0.665028
Target:  5'- cGUGAcGAcGaaaccgaGCGAGGCCucgucGGCGGCCGCc -3'
miRNA:   3'- -CACU-CUuCg------UGCUCCGG-----UCGCUGGCG- -5'
9362 5' -57.3 NC_002512.2 + 82391 0.66 0.913915
Target:  5'- -gGAGAAGCGCc-GGUcgcgcccguccgCAGCGcCCGCg -3'
miRNA:   3'- caCUCUUCGUGcuCCG------------GUCGCuGGCG- -5'
9362 5' -57.3 NC_002512.2 + 90436 0.7 0.723461
Target:  5'- -gGAGAagGGCAgGaAGGgCGGCGGCCGg -3'
miRNA:   3'- caCUCU--UCGUgC-UCCgGUCGCUGGCg -5'
9362 5' -57.3 NC_002512.2 + 90501 0.74 0.527782
Target:  5'- -cGGGAucggGGC-CGAGGCCGGCGGCgGa -3'
miRNA:   3'- caCUCU----UCGuGCUCCGGUCGCUGgCg -5'
9362 5' -57.3 NC_002512.2 + 90550 0.68 0.830599
Target:  5'- -gGAGGAGCgggaggACGAGGgCgagGGCGACgGCc -3'
miRNA:   3'- caCUCUUCG------UGCUCCgG---UCGCUGgCG- -5'
9362 5' -57.3 NC_002512.2 + 90632 0.72 0.605682
Target:  5'- -cGGGcGGCGCGAcccGGCgCcGCGGCCGCg -3'
miRNA:   3'- caCUCuUCGUGCU---CCG-GuCGCUGGCG- -5'
9362 5' -57.3 NC_002512.2 + 90766 0.67 0.893964
Target:  5'- -cGAGAAGCGCuucuuGGCCaacgaggugacgcgGGCGAcgauCCGCu -3'
miRNA:   3'- caCUCUUCGUGcu---CCGG--------------UCGCU----GGCG- -5'
9362 5' -57.3 NC_002512.2 + 92522 0.73 0.585974
Target:  5'- -gGAGAccGCGCGGaucuacccGGCCgcGGCGGCCGCg -3'
miRNA:   3'- caCUCUu-CGUGCU--------CCGG--UCGCUGGCG- -5'
9362 5' -57.3 NC_002512.2 + 92592 0.69 0.784608
Target:  5'- -gGAGggGCGgcgguccCGAGGCCGGUcgcgacgacggacgGACgGCg -3'
miRNA:   3'- caCUCuuCGU-------GCUCCGGUCG--------------CUGgCG- -5'
9362 5' -57.3 NC_002512.2 + 92940 0.7 0.751797
Target:  5'- -aGGGggGccCugGAGGUgcaCAGCGACCGa -3'
miRNA:   3'- caCUCuuC--GugCUCCG---GUCGCUGGCg -5'
9362 5' -57.3 NC_002512.2 + 94661 0.66 0.908122
Target:  5'- -cGAGGcGGCcCGGGGCCGGgGGgccccccggcCCGCu -3'
miRNA:   3'- caCUCU-UCGuGCUCCGGUCgCU----------GGCG- -5'
9362 5' -57.3 NC_002512.2 + 95825 0.71 0.710964
Target:  5'- -gGGGAAgguggcgacggcccGCAgGAGGCCGGgGGCgGCg -3'
miRNA:   3'- caCUCUU--------------CGUgCUCCGGUCgCUGgCG- -5'
9362 5' -57.3 NC_002512.2 + 96198 0.79 0.290892
Target:  5'- -cGGGAGGCggccGCGAGGUCggccacGGCGGCCGCg -3'
miRNA:   3'- caCUCUUCG----UGCUCCGG------UCGCUGGCG- -5'
9362 5' -57.3 NC_002512.2 + 96340 0.66 0.908122
Target:  5'- aGUG-GAAGagcaCGCGGGGCgugaGGCGAUCGUc -3'
miRNA:   3'- -CACuCUUC----GUGCUCCGg---UCGCUGGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.