miRNA display CGI


Results 1 - 20 of 25 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9363 5' -49.1 NC_002512.2 + 195362 0.66 0.99991
Target:  5'- -aCCCCGGGUG-CUGG-UCGGcugCCu -3'
miRNA:   3'- ggGGGGUUUACaGAUCuAGCCuuaGG- -5'
9363 5' -49.1 NC_002512.2 + 180009 0.66 0.99991
Target:  5'- aUCCCCCAGcgGgaCUcGAucacgcUCGGGAUCUc -3'
miRNA:   3'- -GGGGGGUUuaCa-GAuCU------AGCCUUAGG- -5'
9363 5' -49.1 NC_002512.2 + 98152 0.66 0.999884
Target:  5'- cCCgCCCCGgcggucgccGcgGUCUGGA-CGGGcgcggcgaccGUCCg -3'
miRNA:   3'- -GG-GGGGU---------UuaCAGAUCUaGCCU----------UAGG- -5'
9363 5' -49.1 NC_002512.2 + 81895 0.66 0.999884
Target:  5'- cCCUCCCGGA-GUCaAGAaacgUCGGAuagaCCg -3'
miRNA:   3'- -GGGGGGUUUaCAGaUCU----AGCCUua--GG- -5'
9363 5' -49.1 NC_002512.2 + 214520 0.66 0.999851
Target:  5'- -aCCUCGAcAUGuUCUaucGGAUCGGggUCa -3'
miRNA:   3'- ggGGGGUU-UAC-AGA---UCUAGCCuuAGg -5'
9363 5' -49.1 NC_002512.2 + 218240 0.66 0.999851
Target:  5'- -gCgCCGAuauAUGUCcGGGUCGGcGUCCu -3'
miRNA:   3'- ggGgGGUU---UACAGaUCUAGCCuUAGG- -5'
9363 5' -49.1 NC_002512.2 + 89881 0.66 0.99981
Target:  5'- gCUCUCCAGcgccucgGUCUGGGUCGGcgaccCCa -3'
miRNA:   3'- -GGGGGGUUua-----CAGAUCUAGCCuua--GG- -5'
9363 5' -49.1 NC_002512.2 + 60758 0.67 0.999759
Target:  5'- aCCCCCCAAccaGUGUCUcuGAUCauauguuaGGcccuUCCc -3'
miRNA:   3'- -GGGGGGUU---UACAGAu-CUAG--------CCuu--AGG- -5'
9363 5' -49.1 NC_002512.2 + 77771 0.67 0.999759
Target:  5'- aUCCCCCAGAc-UCcGGGUCGGGcggacgguUCCu -3'
miRNA:   3'- -GGGGGGUUUacAGaUCUAGCCUu-------AGG- -5'
9363 5' -49.1 NC_002512.2 + 169954 0.67 0.999697
Target:  5'- gCCCgCCCAcAUGUagaacaGGGUCGGGgcgaacGUCCc -3'
miRNA:   3'- -GGG-GGGUuUACAga----UCUAGCCU------UAGG- -5'
9363 5' -49.1 NC_002512.2 + 2089 0.67 0.999621
Target:  5'- -aCCCCAGuUGUCUcacuuuGUCGGGccGUCCu -3'
miRNA:   3'- ggGGGGUUuACAGAuc----UAGCCU--UAGG- -5'
9363 5' -49.1 NC_002512.2 + 172844 0.67 0.999621
Target:  5'- gCCCCCCGGucGUC-GGAcgCGGccUCCg -3'
miRNA:   3'- -GGGGGGUUuaCAGaUCUa-GCCuuAGG- -5'
9363 5' -49.1 NC_002512.2 + 60232 0.67 0.999418
Target:  5'- aCCCCCCAA---UC-GGAgCGGAuUCCc -3'
miRNA:   3'- -GGGGGGUUuacAGaUCUaGCCUuAGG- -5'
9363 5' -49.1 NC_002512.2 + 5211 0.67 0.999418
Target:  5'- aCCUCCGAGUGgCUAGAUgauaGGuGUCUc -3'
miRNA:   3'- gGGGGGUUUACaGAUCUAg---CCuUAGG- -5'
9363 5' -49.1 NC_002512.2 + 214789 0.67 0.999418
Target:  5'- gCCCUCCGGGUcccCUGGucgCGGAgGUCCg -3'
miRNA:   3'- -GGGGGGUUUAca-GAUCua-GCCU-UAGG- -5'
9363 5' -49.1 NC_002512.2 + 220000 0.68 0.999193
Target:  5'- cUCCCCCucgcccggcggGUCgAGAggccgcuccgucUCGGggUCCg -3'
miRNA:   3'- -GGGGGGuuua-------CAGaUCU------------AGCCuuAGG- -5'
9363 5' -49.1 NC_002512.2 + 220064 0.68 0.998939
Target:  5'- uCCgCCCGAGacUCUGGcgCGG-AUCCu -3'
miRNA:   3'- -GGgGGGUUUacAGAUCuaGCCuUAGG- -5'
9363 5' -49.1 NC_002512.2 + 158304 0.68 0.998719
Target:  5'- gCCCCCAAGgccgcgGUCguccggCGcGAGUCCg -3'
miRNA:   3'- gGGGGGUUUa-----CAGaucua-GC-CUUAGG- -5'
9363 5' -49.1 NC_002512.2 + 189026 0.69 0.997808
Target:  5'- cCUCCCCuccGUGUCUGucguUCGGuaauGUCCu -3'
miRNA:   3'- -GGGGGGuu-UACAGAUcu--AGCCu---UAGG- -5'
9363 5' -49.1 NC_002512.2 + 220156 0.69 0.997361
Target:  5'- gCCCCCAAgggcgucGUGcUCUGcGUCGGGAggagguUCCg -3'
miRNA:   3'- gGGGGGUU-------UAC-AGAUcUAGCCUU------AGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.