miRNA display CGI


Results 1 - 20 of 43 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9368 5' -54.4 NC_002512.2 + 173535 0.66 0.981811
Target:  5'- cCGUCGgGGCcgucuGCCCG-GGCUGUGc-- -3'
miRNA:   3'- aGCAGUgCCG-----UGGGCuCUGGCAUaaa -5'
9368 5' -54.4 NC_002512.2 + 220053 0.66 0.981811
Target:  5'- cUCGaCAUGGCuccGCCCGAGACUcUGg-- -3'
miRNA:   3'- -AGCaGUGCCG---UGGGCUCUGGcAUaaa -5'
9368 5' -54.4 NC_002512.2 + 221834 0.66 0.981811
Target:  5'- gCGUCcgacccgcgGgGGCGCCuCGGGACCGg---- -3'
miRNA:   3'- aGCAG---------UgCCGUGG-GCUCUGGCauaaa -5'
9368 5' -54.4 NC_002512.2 + 149217 0.66 0.981811
Target:  5'- cCGUCGCcGcCGCCgCGGGACCGa---- -3'
miRNA:   3'- aGCAGUGcC-GUGG-GCUCUGGCauaaa -5'
9368 5' -54.4 NC_002512.2 + 204710 0.66 0.979733
Target:  5'- aCGUCggcgACGGCggGCCCGGGGCgGg---- -3'
miRNA:   3'- aGCAG----UGCCG--UGGGCUCUGgCauaaa -5'
9368 5' -54.4 NC_002512.2 + 100741 0.66 0.979733
Target:  5'- aUCGUCGUGGgGCCCGuuguacugcgcgAGGCUGUAg-- -3'
miRNA:   3'- -AGCAGUGCCgUGGGC------------UCUGGCAUaaa -5'
9368 5' -54.4 NC_002512.2 + 108511 0.66 0.979733
Target:  5'- cCGggCcCGGCGCCCGAccGGCCGg---- -3'
miRNA:   3'- aGCa-GuGCCGUGGGCU--CUGGCauaaa -5'
9368 5' -54.4 NC_002512.2 + 169815 0.66 0.979515
Target:  5'- gUCGgaaCACgGGCACCggguucaggaacaCGGGGCCGUAg-- -3'
miRNA:   3'- -AGCa--GUG-CCGUGG-------------GCUCUGGCAUaaa -5'
9368 5' -54.4 NC_002512.2 + 200895 0.66 0.977482
Target:  5'- gUCGUUcaGCGuGaACgCCGAGGCCGUGUa- -3'
miRNA:   3'- -AGCAG--UGC-CgUG-GGCUCUGGCAUAaa -5'
9368 5' -54.4 NC_002512.2 + 221756 0.66 0.977482
Target:  5'- cCGUCgaACGGCAgCUGGGcgGCCGUcgUg -3'
miRNA:   3'- aGCAG--UGCCGUgGGCUC--UGGCAuaAa -5'
9368 5' -54.4 NC_002512.2 + 218451 0.66 0.977482
Target:  5'- cCGUcCGCGGCGucCCCGcGGACCGc---- -3'
miRNA:   3'- aGCA-GUGCCGU--GGGC-UCUGGCauaaa -5'
9368 5' -54.4 NC_002512.2 + 140269 0.66 0.972438
Target:  5'- -aGUCuuCGGCGCCCGAGcGCCc----- -3'
miRNA:   3'- agCAGu-GCCGUGGGCUC-UGGcauaaa -5'
9368 5' -54.4 NC_002512.2 + 96873 0.66 0.972438
Target:  5'- cUCGaUCGCGGCGcacuuCCCGgGGGCCGg---- -3'
miRNA:   3'- -AGC-AGUGCCGU-----GGGC-UCUGGCauaaa -5'
9368 5' -54.4 NC_002512.2 + 222603 0.67 0.96963
Target:  5'- cUGUC-CGGCcCCCGGGGCCu----- -3'
miRNA:   3'- aGCAGuGCCGuGGGCUCUGGcauaaa -5'
9368 5' -54.4 NC_002512.2 + 113493 0.67 0.96963
Target:  5'- gCGUCAgGGCgACCCGccccggGGACCGc---- -3'
miRNA:   3'- aGCAGUgCCG-UGGGC------UCUGGCauaaa -5'
9368 5' -54.4 NC_002512.2 + 92594 0.67 0.966624
Target:  5'- -aGggGCGGCGguCCCGAGGCCGg---- -3'
miRNA:   3'- agCagUGCCGU--GGGCUCUGGCauaaa -5'
9368 5' -54.4 NC_002512.2 + 55318 0.67 0.963414
Target:  5'- uUCGUCcCGGCACUCGAcuCCGg---- -3'
miRNA:   3'- -AGCAGuGCCGUGGGCUcuGGCauaaa -5'
9368 5' -54.4 NC_002512.2 + 197322 0.67 0.963414
Target:  5'- cCGgcaccCGCGGCGCCCGGcGGCUGg---- -3'
miRNA:   3'- aGCa----GUGCCGUGGGCU-CUGGCauaaa -5'
9368 5' -54.4 NC_002512.2 + 142804 0.67 0.959995
Target:  5'- aCGUCGCcccGCgACCCGAGgaacGCCGUAa-- -3'
miRNA:   3'- aGCAGUGc--CG-UGGGCUC----UGGCAUaaa -5'
9368 5' -54.4 NC_002512.2 + 106121 0.67 0.959995
Target:  5'- aCGUCACGGgagaGCCCGAGGagcuCCGc---- -3'
miRNA:   3'- aGCAGUGCCg---UGGGCUCU----GGCauaaa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.