miRNA display CGI


Results 1 - 20 of 28 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9369 3' -47.2 NC_002512.2 + 222218 0.66 0.999995
Target:  5'- gUCGGGg--UgGCCgUCGggGCCGCGUc -3'
miRNA:   3'- -GGCUUaaaAgCGGgAGUaaUGGUGCA- -5'
9369 3' -47.2 NC_002512.2 + 128289 0.66 0.999993
Target:  5'- gCCGAcggc-CGCCCgCAcgACCGCGg -3'
miRNA:   3'- -GGCUuaaaaGCGGGaGUaaUGGUGCa -5'
9369 3' -47.2 NC_002512.2 + 214291 0.66 0.99999
Target:  5'- cCCGAGggcuucaccUUCGUCUUCGgcgUGCCGCa- -3'
miRNA:   3'- -GGCUUaa-------AAGCGGGAGUa--AUGGUGca -5'
9369 3' -47.2 NC_002512.2 + 148680 0.66 0.99999
Target:  5'- gCGGGccgUgGCCCUCGUcGCCGCu- -3'
miRNA:   3'- gGCUUaaaAgCGGGAGUAaUGGUGca -5'
9369 3' -47.2 NC_002512.2 + 95852 0.66 0.99999
Target:  5'- gCCGGGggcggCGUCCUCccaggGCCGCGc -3'
miRNA:   3'- -GGCUUaaaa-GCGGGAGuaa--UGGUGCa -5'
9369 3' -47.2 NC_002512.2 + 205162 0.66 0.999987
Target:  5'- cCCG-----UCGCUCUCGacGCCGCGUc -3'
miRNA:   3'- -GGCuuaaaAGCGGGAGUaaUGGUGCA- -5'
9369 3' -47.2 NC_002512.2 + 180418 0.66 0.999982
Target:  5'- gUCGAAg--UCGUCCUCGgugACgGCGc -3'
miRNA:   3'- -GGCUUaaaAGCGGGAGUaa-UGgUGCa -5'
9369 3' -47.2 NC_002512.2 + 214413 0.66 0.999982
Target:  5'- gCCGGAgcgcgccgCGCCCgagg-ACCGCGUc -3'
miRNA:   3'- -GGCUUaaaa----GCGGGaguaaUGGUGCA- -5'
9369 3' -47.2 NC_002512.2 + 130874 0.67 0.999975
Target:  5'- gCCGAcg---CGCCCuaUCGggGCCGCGc -3'
miRNA:   3'- -GGCUuaaaaGCGGG--AGUaaUGGUGCa -5'
9369 3' -47.2 NC_002512.2 + 99628 0.67 0.999975
Target:  5'- gCGGucg-UCGCCCUCGgaggGCC-CGg -3'
miRNA:   3'- gGCUuaaaAGCGGGAGUaa--UGGuGCa -5'
9369 3' -47.2 NC_002512.2 + 142532 0.67 0.999966
Target:  5'- aCGGuacagUUCGCCC-CGUcgACCGCGc -3'
miRNA:   3'- gGCUuaa--AAGCGGGaGUAa-UGGUGCa -5'
9369 3' -47.2 NC_002512.2 + 129987 0.67 0.999955
Target:  5'- cCCGG-----CGCCCUCGacggGCCGCGc -3'
miRNA:   3'- -GGCUuaaaaGCGGGAGUaa--UGGUGCa -5'
9369 3' -47.2 NC_002512.2 + 188999 0.67 0.99994
Target:  5'- cCCGG---UUCGUCCUCuu--CCGCGg -3'
miRNA:   3'- -GGCUuaaAAGCGGGAGuaauGGUGCa -5'
9369 3' -47.2 NC_002512.2 + 216155 0.67 0.99994
Target:  5'- aCCGGcgUcgCGCCCcUCAggcucCCGCGUc -3'
miRNA:   3'- -GGCUuaAaaGCGGG-AGUaau--GGUGCA- -5'
9369 3' -47.2 NC_002512.2 + 218253 0.68 0.999898
Target:  5'- uCCGggUcggCGUCCUCc--ACCAUGUa -3'
miRNA:   3'- -GGCuuAaaaGCGGGAGuaaUGGUGCA- -5'
9369 3' -47.2 NC_002512.2 + 103388 0.68 0.999898
Target:  5'- gCCGAGgcgcUCGCgCUCcgggGCCACGa -3'
miRNA:   3'- -GGCUUaaa-AGCGgGAGuaa-UGGUGCa -5'
9369 3' -47.2 NC_002512.2 + 193134 0.68 0.999898
Target:  5'- cCCGAcgUcacggUCGUCCUCGUccugGCCGgCGUc -3'
miRNA:   3'- -GGCUuaAa----AGCGGGAGUAa---UGGU-GCA- -5'
9369 3' -47.2 NC_002512.2 + 214932 0.68 0.999898
Target:  5'- gCCGcGgcUUCGUCCUCccgugGCCGCGg -3'
miRNA:   3'- -GGCuUaaAAGCGGGAGuaa--UGGUGCa -5'
9369 3' -47.2 NC_002512.2 + 193179 0.68 0.999867
Target:  5'- gCGAugg-UCGCCUUCuucuucgACCGCGUc -3'
miRNA:   3'- gGCUuaaaAGCGGGAGuaa----UGGUGCA- -5'
9369 3' -47.2 NC_002512.2 + 101973 0.68 0.99983
Target:  5'- aCCGAuc---CGCCCUCGccucCCACGg -3'
miRNA:   3'- -GGCUuaaaaGCGGGAGUaau-GGUGCa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.