Results 21 - 40 of 50 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
9370 | 5' | -57 | NC_002512.2 | + | 90598 | 0.68 | 0.852853 |
Target: 5'- cCCGGGGCGGGcGccccccuUCGCCCCCgcgcgccgggCGGCGc -3' miRNA: 3'- -GGCCUCGUUC-C-------AGUGGGGGa---------GUUGCa -5' |
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9370 | 5' | -57 | NC_002512.2 | + | 144570 | 0.68 | 0.856595 |
Target: 5'- aCCGGcgaccuacgucgagcGGCAGGcGUCgAUCCCCUCGcACGa -3' miRNA: 3'- -GGCC---------------UCGUUC-CAG-UGGGGGAGU-UGCa -5' |
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9370 | 5' | -57 | NC_002512.2 | + | 219515 | 0.68 | 0.860291 |
Target: 5'- gCCGGcGUucGG-CACCCCCgucuucgUCGGCGUg -3' miRNA: 3'- -GGCCuCGuuCCaGUGGGGG-------AGUUGCA- -5' |
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9370 | 5' | -57 | NC_002512.2 | + | 186237 | 0.68 | 0.868254 |
Target: 5'- aCCGaGGGCGAGGUC-CCggUCCUCGgucACGa -3' miRNA: 3'- -GGC-CUCGUUCCAGuGG--GGGAGU---UGCa -5' |
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9370 | 5' | -57 | NC_002512.2 | + | 103981 | 0.68 | 0.882121 |
Target: 5'- gCCGGAGCu--GUCGCgCaCCCUgGACGc -3' miRNA: 3'- -GGCCUCGuucCAGUG-G-GGGAgUUGCa -5' |
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9370 | 5' | -57 | NC_002512.2 | + | 105705 | 0.68 | 0.88875 |
Target: 5'- cCCGGcggacgAGCAgccAGGUgCACuCCCgCUCGACGa -3' miRNA: 3'- -GGCC------UCGU---UCCA-GUG-GGG-GAGUUGCa -5' |
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9370 | 5' | -57 | NC_002512.2 | + | 189186 | 0.67 | 0.901379 |
Target: 5'- gCCGGcaAGCAcccAGGUCGCCgCgggcggcaugCUCGACGUc -3' miRNA: 3'- -GGCC--UCGU---UCCAGUGGgG----------GAGUUGCA- -5' |
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9370 | 5' | -57 | NC_002512.2 | + | 210677 | 0.67 | 0.924049 |
Target: 5'- cCUGGuccaagcgcaacGGCAAGGcgccgcgggagaUCACCCgcuuCCUCAGCGUc -3' miRNA: 3'- -GGCC------------UCGUUCC------------AGUGGG----GGAGUUGCA- -5' |
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9370 | 5' | -57 | NC_002512.2 | + | 150382 | 0.67 | 0.924049 |
Target: 5'- cUCGGAGUGAGaggcGUC-CCCCCUCccCGa -3' miRNA: 3'- -GGCCUCGUUC----CAGuGGGGGAGuuGCa -5' |
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9370 | 5' | -57 | NC_002512.2 | + | 123062 | 0.67 | 0.924049 |
Target: 5'- gCGGAagaggaggucGCGGcGGccUCGCCCCCUCccGACGUc -3' miRNA: 3'- gGCCU----------CGUU-CC--AGUGGGGGAG--UUGCA- -5' |
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9370 | 5' | -57 | NC_002512.2 | + | 98127 | 0.67 | 0.91871 |
Target: 5'- gCCGGGGCGcuGGUCgucgcggccGCCCgCCcCGGCGg -3' miRNA: 3'- -GGCCUCGUu-CCAG---------UGGG-GGaGUUGCa -5' |
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9370 | 5' | -57 | NC_002512.2 | + | 220131 | 0.67 | 0.907373 |
Target: 5'- gCGGGGCGgcGGGUCcggcuccgccGCCCCCaagGGCGUc -3' miRNA: 3'- gGCCUCGU--UCCAG----------UGGGGGag-UUGCA- -5' |
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9370 | 5' | -57 | NC_002512.2 | + | 191814 | 0.67 | 0.918164 |
Target: 5'- aCCGGGcacugacgcgcGCGGGGUCcuugcgcccucccACCCCUcCGGCGUc -3' miRNA: 3'- -GGCCU-----------CGUUCCAG-------------UGGGGGaGUUGCA- -5' |
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9370 | 5' | -57 | NC_002512.2 | + | 216301 | 0.67 | 0.913151 |
Target: 5'- cCCGGGGacguGGGUCACCUgCaUCuGCGg -3' miRNA: 3'- -GGCCUCgu--UCCAGUGGGgG-AGuUGCa -5' |
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9370 | 5' | -57 | NC_002512.2 | + | 156932 | 0.67 | 0.901379 |
Target: 5'- -aGGAGCccacGGUCGCCaCCCUgGugGc -3' miRNA: 3'- ggCCUCGuu--CCAGUGG-GGGAgUugCa -5' |
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9370 | 5' | -57 | NC_002512.2 | + | 128136 | 0.67 | 0.907373 |
Target: 5'- aCGGAGCGcccGGGcCACCaCCUC-GCGa -3' miRNA: 3'- gGCCUCGU---UCCaGUGGgGGAGuUGCa -5' |
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9370 | 5' | -57 | NC_002512.2 | + | 197660 | 0.67 | 0.907373 |
Target: 5'- uCUGGcccGaCGAGGUggaCGCCCuCCUCAACGg -3' miRNA: 3'- -GGCCu--C-GUUCCA---GUGGG-GGAGUUGCa -5' |
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9370 | 5' | -57 | NC_002512.2 | + | 147444 | 0.67 | 0.901379 |
Target: 5'- uCgGGAGCGGGaccgaCGCCCCCUCGuccccuccgccGCGg -3' miRNA: 3'- -GgCCUCGUUCca---GUGGGGGAGU-----------UGCa -5' |
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9370 | 5' | -57 | NC_002512.2 | + | 202087 | 0.67 | 0.895171 |
Target: 5'- aCGGGGCGccGGUCACCUCgUCcgaccGCGUc -3' miRNA: 3'- gGCCUCGUu-CCAGUGGGGgAGu----UGCA- -5' |
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9370 | 5' | -57 | NC_002512.2 | + | 191350 | 0.67 | 0.895171 |
Target: 5'- aCGGGGguAGGUCGCCgcgcgaCCUUGGCu- -3' miRNA: 3'- gGCCUCguUCCAGUGGg-----GGAGUUGca -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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